BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH12FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig292 710 0.0
>3x_Contig292
Length = 1376
Score = 710 bits (358), Expect = 0.0
Identities = 367/370 (99%)
Strand = Plus / Plus
Query: 86 atagaataacgttaaatagccgttgtgtttctcagcttcaaccggacttcgatagtaatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 atagaataacgttaaatagccgttgtgtttctcagcttcaaccggacttcgatagtaatg 1066
Query: 146 ttaaccgatactaaaaaccggttctctaaagctattcttccctcgacctgttagatagct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 ttaaccgatactaaaaaccggttctctaaagctattcttccctcgacctgttagatagct 1126
Query: 206 ttcaattgtgtcaagtcttactttgggattcgagttaacaaatgcttaaattgaactcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 ttcaattgtgtcaagtcttactttgggattcgagttaacaaatgcttaaattgaactcaa 1186
Query: 266 gcacaacagattacgaagttttcagctcttcgtatacaggtggtaacaatcaatattctg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 gcacaacagattacgaagttttcagctcttcgtatacaggtggtaacaatcaatattctg 1246
Query: 326 cgacacgttatgagctaatcaataggtactaaagtgtataccccccttgttattggcgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 cgacacgttatgagctaatcaataggtactaaagtgtataccccccttgttattggcgaa 1306
Query: 386 tgctcgctactattcttgtagttctggcttcgatatttatgttgaactgaaaaaagtaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1307 tgctcgctactattcttgtagttctggcttcgatatttatgttgaactgaaaaaaagtag 1366
Query: 446 aaacgcgaca 455
||||||||||
Sbjct: 1367 aaacgcgaca 1376
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6050
Number of Sequences: 1807
Number of extensions: 6050
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)