BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA01FM1.SCF screened BAC_end
(1017 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 583 e-166
>3x_Contig846
Length = 2695
Score = 583 bits (294), Expect = e-166
Identities = 335/342 (97%), Gaps = 5/342 (1%)
Strand = Plus / Minus
Query: 88 tacccaagtattttcgacggaaatacgatttctgttattataagagtcatcagcgcatag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 tacccaagtattttcgacggaaatacgatttctgttattataagagtcatcagcgcatag 2330
Query: 148 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 2270
Query: 208 cggcgggaataactacgccagtatgtccgtttcccatggaaaagttaaaagcagttagat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 cggcgggaataactacgccagtatgtccgtttcccatggaaaagttaaaagcagttagat 2210
Query: 268 tcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgacctttaatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2209 tcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgacc-ttaatg 2151
Query: 328 gtcaaacattatgttagggttccagttattcttttctgcctgttattgtttcaaaatgac 387
||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct: 2150 gtcaaacattaggttagggttccagttattc-tttctgcctgttattg-ttcaaattgac 2093
Query: 388 aaatcacagggaagcttgtttagcacaatttgtatttccatt 429
||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 2092 aaatcacaggg-agcttgtttagcac-atttgtatttccatt 2053
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,017
Number of Sequences: 1807
Number of extensions: 16017
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 1017
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1001
effective length of database: 10,329,639
effective search space: 10339968639
effective search space used: 10339968639
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)