BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA02FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1273 0.0
>3x_Contig1294
Length = 6938
Score = 1273 bits (642), Expect = 0.0
Identities = 722/740 (97%), Gaps = 7/740 (0%)
Strand = Plus / Minus
Query: 111 ttcatcctcatcatcatcttcaggatcatcttcttgctcagagttgccttcggcatctac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 ttcatcctcatcatcatcttcaggatcatcttcttgctcagagttgccttcggcatctac 1674
Query: 171 tatatcgaggtttcctctggagatagacacatcttgattgccacctaataatggtttttt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 tatatcgaggtttcctctggagatagacacatcttgattgccacctaataatggtttttt 1614
Query: 231 ggcagtcttttttacgattgtatttccaagggcatctaactccacctcttcgacttcagc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 ggcagtcttttttacgattgtatttccaagggcatctaactccacctcttcgacttcagc 1554
Query: 291 aatatcgtcttcggatgatgacaacgatgccgaacttaattcaccattcaaaacatcatg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 aatatcgtcttcggatgatgacaacgatgccgaacttaattcaccattcaaaacatcatg 1494
Query: 351 ctcttccaccattcttgaagatccattgaacattccttgaccattatcacttccatcctc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 ctcttccaccattcttgaagatccattgaacattccttgaccattatcacttccatcctc 1434
Query: 411 ctcttcatcgctgtcttcaaattctttttcaaatctgcgatgcaacttattgtagtattc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 ctcttcatcgctgtcttcaaattctttttcaaatctgcgatgcaacttattgtagtattc 1374
Query: 471 agttccattattgtcatcttcggatgattcgtgccagttctcttgcttcttggacatcgg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 agttccattattgtcatcttcggatgattcgtgccagttctcttgcttcttggacatcgg 1314
Query: 531 aagacgtgcatcaagattaatcttatcataattgcaacaccaangngatagattcaattt 590
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1313 aagacgtgcatcaagattaatcttatcataattgcaacaccaaggtgatagattcaattt 1254
Query: 591 gcttttgaatataactcttgagttatttttcctgatcatataagtgcgaaggtcaaaaaa 650
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1253 gcttttgaatataactcttgagttatttttcctgatcatataagtgcgagggtcaaaaac 1194
Query: 651 cgaccggttgatgtgaacagattacaatggttgaaggtctagaaatcaaaatttgttttg 710
||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 1193 ggaccggttgatgtgaacagataacaatgg-tggaggtctagaaatcaaaatttgttttg 1135
Query: 711 actttgaggatttgcgaaccatgttctcaatatgcatcctcttatagtcatcatcaatcg 770
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 1134 actttgaggatttgcgaaccatgttctcagtatgcatcctcttatagtcatcatc-atcg 1076
Query: 771 atggcaaggctttgacaacactgaatttaacttcaattgatcctatccctcatccaaggt 830
||||||| ||||||||||||||| |||||||||| ||||||||||||| ||| ||||||
Sbjct: 1075 atggcaa-gctttgacaacactg-atttaacttc-attgatcctatcctccat-caaggt 1020
Query: 831 tactaattttttgattgaca 850
|||| | |||||||||||||
Sbjct: 1019 tact-agtttttgattgaca 1001
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8224
Number of Sequences: 1807
Number of extensions: 8224
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)