BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA03FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1574 797 0.0
>3x_Contig1574
Length = 8021
Score = 797 bits (402), Expect = 0.0
Identities = 567/597 (94%), Gaps = 19/597 (3%)
Strand = Plus / Minus
Query: 86 caactcagaatttatctcattgcagtatttatactcccatgattcgtctttaccttgtag 145
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3158 caactcagaatttatctcattgcagtatttagactcccatgattcgtctttaccttgtag 3099
Query: 146 tttaacaactagttgccgaaaagtagggcactctgctactgttgagtactggaatagcgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3098 tttaacaactagttgccgaaaagtagggcactctgctactgttgagtactggaatagcgt 3039
Query: 206 ttcctggcacctatcattgacatatatgctaacaatcattgtagccaattgcttaagttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3038 ttcctggcacctatcattgacatatatgctaacaatcattgtagccaattgcttaagttc 2979
Query: 266 actatgataaccaactatatgcggataacccgctgtatcctgtttgcttgccttaatttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2978 actatgataaccaactatatgcggataacccgctgtatcctgtttgcttgccttaatttt 2919
Query: 326 tcattaggttgttccatctcgtacttctctt-atcgttaat-aaaatttcgtgaa-ttca 382
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct: 2918 tcattaggttgttccatctcgtacttctcttaatcgttaatcaaaatttcgtgaatttca 2859
Query: 383 tgaattcaaag-acgaaagaac-agaccaac-acaaacttt-aagatc-acaagaaattc 437
||||||||||| |||||||||| |||||||| ||||||||| |||||| |||||||||||
Sbjct: 2858 tgaattcaaagaacgaaagaacaagaccaacaacaaactttaaagatcaacaagaaattc 2799
Query: 438 ttgttttttagggaactgaacacctttcangtaggcttcagaaagggtatatttgacagc 497
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2798 ttgtttttaagggaactgaacacctttcaggtaggcttcagaaagggtatatttgacagc 2739
Query: 498 attttgttgagaatttatcgc-agaaag-atatactagtttccctctgtgtttccccttt 555
|||| |||||||| ||||||| |||||| |||||||||||||| ||||||||| ||||||
Sbjct: 2738 atttggttgagaa-ttatcgcaagaaagaatatactagtttccttctgtgttt-cccttt 2681
Query: 556 ctgtctgcaattgaaaacactatttgcagttttgtttcttctat-ttagctgaaaagaaa 614
|||||||||||||||||||||| ||||||||||||||| ||||| | ||||| |||| |
Sbjct: 2680 ctgtctgcaattgaaaacactagttgcagttttgtttc-tctatataagctg-aaaggag 2623
Query: 615 aatgtc-aacccacc-atgaattct-gccatgcgaaccctttgagtaa-atagggac 667
|||||| |||||||| |||||| || || ||||||||||||||||||| ||||||||
Sbjct: 2622 aatgtcaaacccaccaatgaatcctggcaatgcgaaccctttgagtaacatagggac 2566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8107
Number of Sequences: 1807
Number of extensions: 8107
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)