BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA03RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1700 1475 0.0
>3x_Contig1700
Length = 16332
Score = 1475 bits (744), Expect = 0.0
Identities = 798/814 (98%), Gaps = 2/814 (0%)
Strand = Plus / Minus
Query: 82 cgtctccaagcacacagatgaaagaaagattatatgcagctcatgaatccaccaaccagt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14015 cgtctccaagcacacagatgaaagaaagattatatgcagctcatgaatccaccaaccagt 13956
Query: 142 ttactgttgacgctggtcttaaggtttgggttgataaagttgaaagcgtcagaaacacag 201
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13955 ttactgttgacgctggtcttaaggtttgggttgataaagctgaaagcgtcagaaacacag 13896
Query: 202 acaatgttgtacgaccaacattatttnnatcatacgctccagttattgaacaattcctga 261
||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 13895 acaatgttgtacgaccaacattagcattagcacacgctccagttattgaacaattcctga 13836
Query: 262 tcactctaacctcattttttttcgaccacaattcaccactagacgtaccattggccaaca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13835 tcactctaacctcattttttttcgaccacaattcaccactagacgtaccattggccaaca 13776
Query: 322 acaaattcaaccagtcggtatccgaatgaggccagaagtagagtttaatcctcgaatcta 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13775 acaaattcaaccagtcggtatccgaatgaggccagaagtagagtttaatcctcgaatcta 13716
Query: 382 gttaattgtttaatattccccctactcatgagaaaatatcatgtctgaaagtatttagta 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13715 gttaattgtttaatattccccctactcatgagaaaatatcatgtctgaaagtatttagta 13656
Query: 442 atcgtccgcactacataataggttggcagagttaccagggtagctgaactggttgccact 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13655 atcgtccgcactacataataggttggcagagttaccagggtagctgaactggttgccact 13596
Query: 502 cataacctatacaggacgctatacttagtgtgaaagatgcctaattgacaactcgtatta 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13595 cataacctatacaggacgctatacttagtgtgaaagatgcctaattgacaactcgtatta 13536
Query: 562 ttttcctttccttcatttccaattttcttcagacaaaggttatgagaaatagtctgaaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13535 ttttcctttccttcatttccaattttcttcagacaaaggttatgagaaatagtctgaaac 13476
Query: 622 ctaaaaagctcatcgattgattctttgacataaaaaaaacagaatacagggaaataactt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13475 ctaaaaagctcatcgattgattctttgacataaaaaaaacagaatacagggaaataactt 13416
Query: 682 aacaacagcacaactccttgggcgttcggactgcgagcttcgatacaataggaaaatgct 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13415 aacaacagcacaactccttgggcgttcggactgcgagcttcgatacaataggaaaatgct 13356
Query: 742 tccccctcgacaaccaggatgttctaccctagcaccaccgtcagggtcggacggccccaa 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 13355 tccccctcgacaaccaggatgttctaccctagcaccaccgtcagggtcggacggcccaaa 13296
Query: 802 aggcagtggacgatttaaagttgcattaaagccaagccatgtgtccattagattggcaac 861
||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 13295 gggcagtggacgatctaaagttgcattaaagccaggccatg-gtccattagattggcaac 13237
Query: 862 agttacaacaggat-aagggatgaaaagtgagtt 894
|||||||||| ||| ||||||||||| |||||||
Sbjct: 13236 agttacaacaagataaagggatgaaaggtgagtt 13203
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6578
Number of Sequences: 1807
Number of extensions: 6578
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)