BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA04FM1.SCF screened BAC_end
(1139 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 462 e-130
>3x_Contig1490
Length = 9411
Score = 462 bits (233), Expect = e-130
Identities = 242/245 (98%)
Strand = Plus / Plus
Query: 88 tctcacaaggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaattt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 tctcacaaggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaattt 3572
Query: 148 gcggataatgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 gcggataatgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgacc 3632
Query: 208 aagaatggttacttggaggatatgggtgctaggccattgaacagattaattcaaaccgag 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 aagaatggttactcggaggatatgggtgctaggccattgaacagattaattcaaaccgag 3692
Query: 268 attttgaacccaatggcaatccatatcttgaagggtgagatccaagacaaagaaattgtt 327
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3693 attttgaacccaatggcaatccatatcttgaagggtgagatcaaagacaaagaaattgtc 3752
Query: 328 aatgt 332
|||||
Sbjct: 3753 aatgt 3757
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,209
Number of Sequences: 1807
Number of extensions: 12209
Number of successful extensions: 115
Number of sequences better than 1.0e-20: 1
length of query: 1139
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1123
effective length of database: 10,329,639
effective search space: 11600184597
effective search space used: 11600184597
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)