BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA05FM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 482 e-136
>3x_Contig1490
Length = 9411
Score = 482 bits (243), Expect = e-136
Identities = 335/359 (93%), Gaps = 5/359 (1%)
Strand = Plus / Plus
Query: 97 ttgagtgagctgaattatgtcgagaatgtactggtttatactggaaaagtaatgtagttg 156
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttgagtgag-tgaattat-tcgagaatgtactggtttatactggaaaagtaatgtagttg 821
Query: 157 ttagagctttgtttgtctgtgaattgggcaatactaaagctgggactggtaccgggagat 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttagagctttgtttgtctgtgaattgggcaatactaaagctgggactggtaccgggagat 881
Query: 217 aggggttgaggtatattttgctttgctattagttttcttaataaggtgattttagggtaa 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aggggttgaggtatattttgctttgctattagttttcttaataaggtgattttagggtat 941
Query: 277 tttttgatagatgcttatagaaag-ataagttaaaaaaaaagtttattg-atattagcgt 334
||||||||||||||||||||||| ||| || ||||||||||||||| | |||| |||||
Sbjct: 942 cttttgatagatgcttatagaaagaataggtgaaaaaaaaagtttatagaatataagcgt 1001
Query: 335 attgaagaagtatataaagggagaccattcgaagaaatatttgttgagtgctttctgctt 394
| |||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 1002 agtgaagaggtatataaagggagaccatccgaagaatcatttgttgagtgcttcctgctt 1061
Query: 395 ttgaattcaatttacttaaattgtatacataggggtctatttgatagaaataaacaaca 453
| |||||||| |||| | |||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 1062 tggaattcaa-ttacatcaattgtatcaatagtggtctatctgatagaaataaacaaca 1119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,800
Number of Sequences: 1807
Number of extensions: 18800
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)