BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA05RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 977 0.0
>3x_Contig1604
Length = 15703
Score = 977 bits (493), Expect = 0.0
Identities = 647/684 (94%), Gaps = 11/684 (1%)
Strand = Plus / Minus
Query: 53 tcatatctaccaaactcttgtacttaaatttgaagggttaagcgcaaccgctgtaactat 112
|||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 14471 tcatatctaccaaact-ttgtagtagaatttgaagggttaagcgcaaccgctgtaactat 14413
Query: 113 tccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaatgaatctga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14412 tccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaatgaatctga 14353
Query: 173 taacttacaaaatattatttccagggatgccggtatctggatttcagaatcgaaagtaag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14352 taacttacaaaatattatttccagggatgccggtatctggatttcagaatcgaaagtaag 14293
Query: 233 agcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccctgattgaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14292 agcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccctgattgaa 14233
Query: 293 tacctccttcaatttttttatctctatttctaacgattctatctgtgtctctttcaactg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14232 tacctccttcaatttttttatctctatttctaacgattctatctgtgtctctttcaactg 14173
Query: 353 tagttcaagtttgaaagtgtctgatgatggctctgtttcagagtcgaaagtggtattgaa 412
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14172 tagttcaagtttgaagttgtctgatgatggctctgtttcagagtcgaaagtggtattgaa 14113
Query: 413 tcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaagagctttc 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 14112 tcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaagagcttcc 14053
Query: 473 aggatgcgtgtttgacg-aatgcctct-cgaggactctat-ctcgggcgaattatgttgn 529
||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 14052 aggatgcgtgtttgacgaaatgcctctgcgaggactctatgctcgggcgaattatgttgt 13993
Query: 530 tctatgagcggctgttcccaata-tgatgacatgc-tgcttcta-tgagtagaaagatcc 586
||||||||||||||||||||||| ||||||||||| |||| ||| ||||||| |||||||
Sbjct: 13992 tctatgagcggctgttcccaatagtgatgacatgcgtgctcctagtgagtag-aagatcc 13934
Query: 587 gctcaaatggcccttaattctttggttttatggggagcccattccattaatgttcccatg 646
|||||||||||||| || || |||||| || |||||||||| |||| ||||||||||||
Sbjct: 13933 gctcaaatggccctgaagtccttggttatagtgggagcccataccatcaatgttcccatg 13874
Query: 647 taagctgaaactaccttcatg-gggcatgcttgaatttaatgacattggcgggttgtgcc 705
||||||||| |||||| |||| || ||||| || | || ||||||||||| |||||||||
Sbjct: 13873 taagctgaagctacctccatgtggccatgc-tggagttcatgacattggc-ggttgtgcc 13816
Query: 706 aaccaatttggactcctccgaact 729
| |||||||||||| || |||||
Sbjct: 13815 atacaatttggactcgtcagaact 13792
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8004
Number of Sequences: 1807
Number of extensions: 8004
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)