BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA06FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1021 0.0
>3x_Contig1799
Length = 39855
Score = 1021 bits (515), Expect = 0.0
Identities = 591/607 (97%), Gaps = 7/607 (1%)
Strand = Plus / Minus
Query: 87 tcatggcatagaaaaggtgattactttgtcactgttcaaccagactcaggtaatacatca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37677 tcatggcatagaaaaggtgattactttgtcactgttcaaccagactcaggtaatacatca 37618
Query: 147 gttttgattcatcaattatccaagcatttaactcaatcgccattcaaaaaatctaagggt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37617 gttttgattcatcaattatccaagcatttaactcaatcgccattcaaaaaatctaagggt 37558
Query: 207 atcattatggatgcaaaattccatccattcaagccacagctcttggtctgttctcaaaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37557 atcattatggatgcaaaattccatccattcaagccacagctcttggtctgttctcaaaga 37498
Query: 267 tacgtcagaatttatgacctatcgcaacaagtgctaatcaagaaacttctacctggtgct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37497 tacgtcagaatttatgacctatcgcaacaagtgctaatcaagaaacttctacctggtgct 37438
Query: 327 cgttggttatctactattgatattcacccaagaggtgataacttaattgcatcctcgttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37437 cgttggttatctactattgatattcacccaagaggtgataacttaattgcatcctcgttt 37378
Query: 387 gacaagagagtgttgtggcatgatcttgaccttgcaagcactccatataagaccttgaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37377 gacaagagagtgttgtggcatgatcttgaccttgcaagcactccatataagaccttgaga 37318
Query: 447 taccatgagaaggctgtaagaagcgtaagtttccacaagaaactaccactgttttgctca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37317 taccatgagaaggctgtaagaagcgtaagtttccacaagaaactaccactgttttgctca 37258
Query: 507 gctgcggatgatggtaacantccatg-tttccatgccacggtctatgacgatttaatgaa 565
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 37257 gctgcggatgatggtaaca-tccatgttttccatgccacggtctatgacgatttaatgaa 37199
Query: 566 g-accctatgatcgttccgttgaagaaactacccgg-caccagattgtgaatagtttagg 623
| ||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 37198 gaaccctatgatcgtcccgttgaagaaactaaccggccacaagattgtgaatagtttagg 37139
Query: 624 tg-tcttaatactatatggcatccccgtggaagcttggctattttttggcaggtgccgac 682
|| ||| |||||||||||||||| ||| |||||||||||||| | | ||||||||||||
Sbjct: 37138 tgttctagatactatatggcatccacgt-gaagcttggctattctct-gcaggtgccgac 37081
Query: 683 caaaccg 689
||||||
Sbjct: 37080 aaaaccg 37074
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7187
Number of Sequences: 1807
Number of extensions: 7187
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)