BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA06RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1113 466 e-131
3x_Contig1371 414 e-115
>3x_Contig1113
Length = 4340
Score = 466 bits (235), Expect = e-131
Identities = 282/290 (97%), Gaps = 6/290 (2%)
Strand = Plus / Plus
Query: 384 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 82
Query: 444 g-gtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 502
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gcgtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 142
Query: 503 atactttctcatagatcaacttcctatactattanngctgt-atgtcgccattaacgcct 561
|||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct: 143 atactttctcatagatcaacttcctatactatta-ggctgtaatgtcgccataaacgcct 201
Query: 562 aagacgaatgttgctcatacggctgttagatatccca-ctatatcacgtgatagacatgc 620
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 aagacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgc 261
Query: 621 tttatttagttggtgttgaaaatccttc-aaagata-aaaaaaaaattca 668
|||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 262 tttatttagttggtgttgaaaatccttcgaaagatagaaaaaaaaattca 311
>3x_Contig1371
Length = 6052
Score = 414 bits (209), Expect = e-115
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 45 ggacgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaag 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5844 ggacgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaag 5903
Query: 105 ttaaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgtta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5904 ttaaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgtta 5963
Query: 165 gatgagatgagcgatgagatgagctagattgaaaattttatacagcttgtgaaaaatttc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5964 gatgagatgagcgatgagatgagctagattgaaaattttatacagcttgtgaaaaatttc 6023
Query: 225 tttttaagcccttagtgatgaagcagcaa 253
|||||||||||||||||||||||||||||
Sbjct: 6024 tttttaagcccttagtgatgaagcagcaa 6052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9946
Number of Sequences: 1807
Number of extensions: 9946
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 2
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)