BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA07FM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 502 e-142
>3x_Contig1590
Length = 13653
Score = 502 bits (253), Expect = e-142
Identities = 277/285 (97%)
Strand = Plus / Plus
Query: 86 ttcgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaactg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 ttcgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaactg 3951
Query: 146 tcgcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3952 tcgcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagta 4011
Query: 206 aaccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4012 aaccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaatg 4071
Query: 266 gggaagagtagtaaagataaacgtgatctgtactacagaaaggcttaggaacaaggatac 325
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4072 gggaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggatac 4131
Query: 326 cgtgcgagatccgtttttcagtttttacagtttgaccaccacttt 370
||||||||||||| ||| |||| |||||||| ||| || |||||
Sbjct: 4132 cgtgcgagatccgctttcaagttattacagttagacgacgacttt 4176
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,641
Number of Sequences: 1807
Number of extensions: 18641
Number of successful extensions: 1687
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)