BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA07RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 959 0.0
>3x_Contig429
Length = 1524
Score = 959 bits (484), Expect = 0.0
Identities = 521/532 (97%), Gaps = 1/532 (0%)
Strand = Plus / Plus
Query: 51 gatagtggagagtttgttgactcattaacttgatcataacttccctgctgaatgatttcg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gatagtggagagtttgttgactcattaacttgatcataacttccctgctgaatgatttcg 664
Query: 111 ccgttttccatgagagtaatggagtccgcaatggagagaacagtaattttatttgttgct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccgttttccatgagagtaatggagtccgcaatggagagaacagtaattttatttgttgct 724
Query: 171 aacacctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatcaaatgt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aacacctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatcaaatgt 784
Query: 231 ttagcgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcagcacga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttagcgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcagcacga 844
Query: 291 gaataaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaatacct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gaataaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaatacct 904
Query: 351 ttttcaccaactaaagtctggtcaccatctggcaacatagagagatcaatactcaaagca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttttcaccaactaaagtctggtcaccatctggcaacatagagagatcaatactcaaagca 964
Query: 411 cacgcttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaagatatta 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 cacgcttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaagatatta 1024
Query: 471 tctttaacagtaccattcataatccatggaacctttgaaacgttggcgacgtttccgtga 530
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1025 tctttaacagtaccattcataatccatggaacctgtgaaacgttggcgacgtcaccgtga 1084
Query: 531 acagttgcgaaaaccttacttctattaaaatctctta-tagactttgaataa 581
|||||||||||| |||| |||| | ||||||| || ||||||||||||||
Sbjct: 1085 acagttgcgaaacccttcactctaatcaaatctcctagtagactttgaataa 1136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,499
Number of Sequences: 1807
Number of extensions: 26499
Number of successful extensions: 2438
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)