BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA08FM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 880 0.0
>3x_Contig1741
Length = 21706
Score = 880 bits (444), Expect = 0.0
Identities = 504/519 (97%), Gaps = 5/519 (0%)
Strand = Plus / Plus
Query: 83 agcttgacagtggagactggcgtgtgatcgcgagtgttgttacgacgtggggatgctatt 142
||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct: 6536 agcttgagagtggagactggtgtatgagcgcgagtgttgttacgacgtggggatgctatt 6595
Query: 143 ttccgttgtttcaccactcgtcttggacttagtagggttgcctctgtggcagggctacca 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 ttccgttgtttcaccactcgtcttggacttagtagggttgcctctgtggcagggctacca 6655
Query: 203 cctgttattggagcgctgctgaccaatttagatgtttcggaagataaatctaattgggat 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656 cctgttattggagcgctgctgaccaatttagatgtttcggaagataaatctaattgggat 6715
Query: 263 tgcgtttgcttttgtaatttttcactttcaagaagtttattcttaaaatattcagcttct 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6716 tgcgtttgcttttgtaatttttcactttcaagaagtttattcttaaaatattcagcttct 6775
Query: 323 ttcttcactagattcttttcaactgcaaaacgttcatccttttcctttctgttttcccag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6776 ttcttcactagattcttttcaactgcaaaacgttcatccttttcctttctgttttcccag 6835
Query: 383 tgggatagttgtgcttgtaatgaccagtgcgatatcgccgacagagatcggttcaataac 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6836 tgggatagttgtgcttgtaatgaccagtgcgatatcgccgacagagatcggttcaataac 6895
Query: 443 gctattattctcacagtgtcctctgtgcgaggctcgatggtttccagatccgaaacagct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6896 gctattattctcacagtgtcctctgtgcgaggctcgatggtttccagatccgaaacagct 6955
Query: 503 ttggctatatccaattcctaatagtctagtaatttttcaacgaatgcttccgttgtcctg 562
|||||||||||||||| ||||||||||||| |||| |||||||||||| || |||||||
Sbjct: 6956 ttggctatatccaatt-ctaatagtctagt-atttctcaacgaatgct--cggtgtcctg 7011
Query: 563 cagcacgttattattcgggctgcaattaatttgacaata 601
|||||||| | ||||||| |||||||| || ||||||||
Sbjct: 7012 cagcacgtca-tattcggtctgcaattcatctgacaata 7049
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8165
Number of Sequences: 1807
Number of extensions: 8165
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)