BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZA08RM1.SCF screened BAC_end (1006 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig380 573 e-163 >3x_Contig380 Length = 1539 Score = 573 bits (289), Expect = e-163 Identities = 307/313 (98%) Strand = Plus / Plus Query: 88 cattgatatgttaatgataatctgctgcaattcgcagaaaacataattattctcctgctc 147 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1043 cattaatatgttaatgataatctgctgcaattcgcagaaaacataattattctcctgctc 1102 Query: 148 acttattttctttcttctcttcgtctgattcttgttgcttaggttcagctggagaataag 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1103 acttattttctttcttctcttcgtctgattcttgttgcttaggttcagctggagaataag 1162 Query: 208 aaccaggactgtattgtggtgaggttggtgagtaagatggagaagtaggggaataggatg 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1163 aaccaggactgtattgtggtgaggttggtgagtaagatggagaagtaggggaataggatg 1222 Query: 268 gtgaggtgggggaataggatggcgatgttggagaataggaaggtgaagtgggagaatatg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1223 gtgaggtgggggaataggatggcgatgttggagaataggaaggtgaagtgggagaatatg 1282 Query: 328 atggcgatgtaggagaatatgaaggagaggttggatagtatgagggtgaagtggttgaat 387 ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| Sbjct: 1283 atggcgatgtaggagaatatgaaggagaggttggagagtaggagggtgaagtgggtgaat 1342 Query: 388 actatggtgatgt 400 | |||||||||| Sbjct: 1343 aagatggtgatgt 1355 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,982 Number of Sequences: 1807 Number of extensions: 19982 Number of successful extensions: 2282 Number of sequences better than 1.0e-20: 1 length of query: 1006 length of database: 10,358,551 effective HSP length: 16 effective length of query: 990 effective length of database: 10,329,639 effective search space: 10226342610 effective search space used: 10226342610 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)