BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZA09FM1.SCF screened BAC_end
         (972 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1159                                                        1098   0.0  

>3x_Contig1159 
          Length = 4873

 Score = 1098 bits (554), Expect = 0.0
 Identities = 627/646 (97%), Gaps = 4/646 (0%)
 Strand = Plus / Plus

                                                                        
Query: 83   agcttggtgacctcttttggtgcgtgcttagaaaggtatcttctattggactcatcgaca 142
            ||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1473 agcttggtgaccagttttggtgcatgctttgaaaggtatcttctattggactcatcgaca 1532

                                                                        
Query: 143  gcaatgtttgacaaagctgtcgtacagtaatattgaacgtcagcgtccatgctggagagt 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1533 gcaatgtttgacaaagctgtcgtacagtaatattgaacgtcagcgtccatgctggagagt 1592

                                                                        
Query: 203  aaagagacaagaactgtgtactgcaccagcatcgaccaattcctttctgttttctccaga 262
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1593 aaagagacaagaactggg-actgcaccagcatcgaccaattcctttctgttttctccaga 1651

                                                                        
Query: 263  gtgagtcatatttaacaaagctccagtagcatttctttgaactctgatatttgaagatct 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 gtgagtcatatttaacaaagctccagtagcatttctttgaactctgatatttgaagatct 1711

                                                                        
Query: 323  agccaactttgttaatggtaccaaggcacccgattgggcaatttcaatcttattgtcatc 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 agccaactttgttaatggtaccaaggcacccgattgggcaatttcaatcttattgtcatc 1771

                                                                        
Query: 383  ttgagtggccaagttggtaatacacccgacagcattacactgcacttccacgttatcaga 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 ttgagtggccaagttggtaatacacccgacagcattacactgcacttccacgttatcaga 1831

                                                                        
Query: 443  tttcatttgctcaatcaagggttccaatccacccatttccacaatcaacaacttattttc 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 tttcatttgctcaatcaagggttccaatccacccatttccacaatcaacaacttattttc 1891

                                                                        
Query: 503  attgttaacagccaaattacccaacgcagcacacgatgcaatcctaatttgtggatctgg 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 attgttaacagccaaattacccaacgcagcacacgatgcaatcctaatttgtggatctgg 1951

                                                                        
Query: 563  gttggtcaatagcattaatatcggcttcaaaacgtctctgcttaccggactaacatactt 622
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1952 gttggtcaatagcattaatatcggctccaaaacgtctctgcttaccggactaacatactt 2011

                                                                        
Query: 623  cttaataatttctggaaacggcaatgcagcacttttttgttaatttaaatttatcagaat 682
            || | |||| |||| ||||| ||||||||||||| ||||| |||| ||| ||||||||||
Sbjct: 2012 ctcagtaatctctgcaaacgccaatgcagcacttctttgtaaattcaaa-ttatcagaat 2070

                                                          
Query: 683  aaaccaacgttgtttaaagcccgtaaccgttttccccgaatagaaa 728
            |||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct: 2071 aaaccaacgttg-ttaaagcccgtaa-cggtttccccgaatagaaa 2114


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8943
Number of Sequences: 1807
Number of extensions: 8943
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)