BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA09RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1370 0.0
>3x_Contig1802
Length = 45229
Score = 1370 bits (691), Expect = 0.0
Identities = 792/814 (97%), Gaps = 9/814 (1%)
Strand = Plus / Minus
Query: 88 aggtgctatcaatggtacgttatggataatgaaattctgatgaaccaatgtgatatgatc 147
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10303 aggtgctatcaatggt-cgtt-tggataatgaaattctgatgaaccaatgtgatatgatc 10246
Query: 148 tgatacgatagtgtcagataaaaatgtgccatttgtttggtgacagtaaaactactggta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10245 tgatacgatagtgtcagataaaaatgtgccatttgtttggtgacagtaaaactactggta 10186
Query: 208 gatggattgaaagatgcttcctgttcatctgtaaatgagtgtcgcacaaaatccgcttct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10185 gatggattgaaagatgcttcctgttcatctgtaaatgagtgtcgcacaaaatccgcttct 10126
Query: 268 tcagcctcctctttcaaatcatgcgatacttcgatcaatttgaatgcaatggtaaacaca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10125 tcagcctcctctttcaaatcatgcgatacttcgatcaatttgaatgcaatggtaaacaca 10066
Query: 328 cgcttcaattgatcaattgttaatggagaaataatctgtggggaatctgataaggcaatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10065 cgcttcaattgatcaattgttaatggagaaataatctgtggggaatctgataaggcaatt 10006
Query: 388 aaaaattcaagtaaacagggtatagcttgctttttcgttaatcttatcgagattgtctct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10005 aaaaattcaagtaaacagggtatagcttgctttttcgttaatcttatcgagattgtctct 9946
Query: 448 aaaagtggattcaaatgtttcttaatggaagaagggatttcgtaacatgaaacactaaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9945 aaaagtggattcaaatgtttcttaatggaagaagggatttcgtaacatgaaacactaaaa 9886
Query: 508 ttatgcaataaggggacaattgtcttctcaaatgatgattctaaaacacctaatgaaatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9885 ttatgcaataaggggacaattgtcttctcaaatgatgattctaaaacacctaatgaaatc 9826
Query: 568 ttaatcatttcatcagccttgctctttcccaaaaacccataatatggaaacaatgaggat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9825 ttaatcatttcatcagccttgctctttcccaaaaacccataatatggaaacaatgaggat 9766
Query: 628 agtgtccttacaaaagcaagttgaacgtcacttttattgatcccagcacccatctttatt 687
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9765 agtgtccttacaaaagcaagttgaacgtcacttttattgatcccaacacccatctttatt 9706
Query: 688 gggcatccatccttttattgatgtaaaataaggtcattgtatatttcaatattgtgtcta 747
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9705 gggcatccatcctttaattgatgtaaaataaggtcatgtaatatttcaatattgtgtcta 9646
Query: 748 tatttnttgaaaaga-gataa-tagccaactgcggacattaatgagaaagtggatacgtg 805
| || ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 9645 tcatttttgaaaagatgataattagccaactgcggacataaatgagaaagtagatacgtg 9586
Query: 806 tacaatttcccagtcaaggaggttttcgtaatgtctcgattaagag-tcagtccacttct 864
||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 9585 tacaa-ttcccagtcaa-gaggttttcgtaatgtctcgattaagagttcagtccac-tct 9529
Query: 865 gaaatatcgat-ttagcgaagcagtctgcttcaa 897
||||||||||| | ||||| ||||||||| ||||
Sbjct: 9528 gaaatatcgatataagcgaggcagtctgcgtcaa 9495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7465
Number of Sequences: 1807
Number of extensions: 7465
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)