BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA11FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1059 0.0
>3x_Contig429
Length = 1524
Score = 1059 bits (534), Expect = 0.0
Identities = 586/600 (97%), Gaps = 3/600 (0%)
Strand = Plus / Minus
Query: 87 attgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttccttggca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttccttggca 538
Query: 147 aaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaattaccgta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaattaccgta 478
Query: 207 gatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatctctaaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatctctaaga 418
Query: 267 agagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagcgccaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagcgccaga 358
Query: 327 agagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcccgtgcg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcccgtgcg 298
Query: 387 tgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctgttggcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctgttggcc 238
Query: 447 gtcattggtaatttctggctcanacactggtcagaagtcaatactgagaaaggctataac 506
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtcattggtaatttctggctcaaacactggtcagaagtcaatactgagaaaggctataac 178
Query: 507 ccccatgccaccagatatttgatgatttacttagctttaggtggttggttccgctctggc 566
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 177 ccccatgccacaagatatttgatgatttacttagctttaggt-gttggttccgctctggc 119
Query: 567 aacattaatacagactattgttctatgggtatnctgtactatccatggcttccagtattt 626
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct: 118 aacattaatacagactattgttctatgggtattctgtactatccatggctccaagtattt 59
Query: 627 acatgaagccaaggccttcaagtgttttaaaagccccctatgtttttctttgaaacaact 686
|||||| | ||| | ||||||||||||| |||| | ||||||| ||||||||||||||||
Sbjct: 58 acatgatg-caatggcttcaagtgtttt-aaaggcacctatgtctttctttgaaacaact 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6864
Number of Sequences: 1807
Number of extensions: 6864
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)