BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZA11RM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1238                                                        1447   0.0  

>3x_Contig1238 
          Length = 5289

 Score = 1447 bits (730), Expect = 0.0
 Identities = 819/842 (97%), Gaps = 6/842 (0%)
 Strand = Plus / Minus

                                                                        
Query: 52   catctcttcatttaaccgtcattcatcatgcatcttctttctatatagtttctcaacgtc 111
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2994 catctcttcatttaaccgccattcatcatgcatcttctttctatatagtttctcaacgtc 2935

                                                                        
Query: 112  cggattcatccttaatgctttacggtaatatttgatcgcgtcggtcatagcaccggcagt 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2934 cggattcatccttaatgctttacggtaatatttgatcgcgtcggtcatagcaccggcagt 2875

                                                                        
Query: 172  ttccttcgaatagcccaactcccatagtgctatagcttcaatcggttcctccattacgcg 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2874 ttccttcgaatagcccaactcccatagtgctatagcttcaatcggttcctccattacgcg 2815

                                                                        
Query: 232  ttgttatttttcgtgcgttaggccccttggtaatgagtatgcttcctctctcttttacct 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2814 ttgttatttttcgtgcgttaggccccttggtaatgagtatgcttcctctctcttttacct 2755

                                                                        
Query: 292  tatatagccgactagctttttatgctgtttacgttttgttcagctttacgcaacaggaac 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2754 tatatagccgactagctttttatgctgtttacgttttgttcagctttacgcaacaggaac 2695

                                                                        
Query: 352  gaatataaagttactaccgagagatggacaagtacgcacaatgttgaaaaatatgaagtg 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2694 gaatataaagttactaccgagagatggacaagtacgcacaatgttgaaaaatatgaagtg 2635

                                                                        
Query: 412  gattccttgtcagtagctgccatcctcagcaaatcggatttcttgattcttatctgacta 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 gattccttgtcagtagctgccatcctcagcaaatcggatttcttgattcttatctgacta 2575

                                                                        
Query: 472  aaaagtaatattaagtacatggcatatttaatatatgaagagctatataacttcaaagtt 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 aaaagtaatattaagtacatggcatatttaatatatgaagagctatataacttcaaagtt 2515

                                                                        
Query: 532  cattaatatgtgaatatcacaagaaacacagtcgataaatcataaatagccagtccttca 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2514 cattaatatgtgaatatcacaagaaacacagtcgataaatcataaatagccagtccttca 2455

                                                                        
Query: 592  agatctggtgcatcaatgaaaagcangaactaaaacanagtgcanagtgtgtagtgctgt 651
            ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct: 2454 agatctggtgcatcaatgaaaagcaggaactaaaacaaagtgcaaagtgtgtagtgctgt 2395

                                                                        
Query: 652  atagatgctgcttatttcattgttatgtcaccacccgattaatttatcgatntcattcaa 711
            ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 2394 atagatgctgcttatttcattgttatgtcacca-ccgattaatttatcgatttcattcaa 2336

                                                                        
Query: 712  taaagtaaaatcaaaattatatttccaaggcaaattcattaccattagataaacttccca 771
            ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 2335 taaagtaaaatcaaaattata-ttcaaaggcaaattcattaccattagataaacttccca 2277

                                                                        
Query: 772  agagtgcagggttttcaagtccaggataagcatttatattgctacctttggaca-tttca 830
            ||||||||| |||||||||||||| || ||||||||||||||||| ||| |||| |||||
Sbjct: 2276 agagtgcagtgttttcaagtccagtattagcatttatattgctactttttgacattttca 2217

                                                                        
Query: 831  attcattaatcg-aaaaattcttggctagctcgtaattcatggaccggaaatcctagaaa 889
             |||||| |||| |||| ||||||||||||||||| ||||  || |||| ||||||||||
Sbjct: 2216 tttcatt-atcgtaaaatttcttggctagctcgtagttcaatga-cggagatcctagaaa 2159

              
Query: 890  tt 891
            ||
Sbjct: 2158 tt 2157


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6785
Number of Sequences: 1807
Number of extensions: 6785
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)