BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZA12FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 908 0.0
>3x_Contig1570
Length = 12233
Score = 908 bits (458), Expect = 0.0
Identities = 517/532 (97%), Gaps = 5/532 (0%)
Strand = Plus / Plus
Query: 87 tgacgttgtaaacggtatcgtagaaagagcgactggtttttatcgagtaaacaatgggta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7638 tgacgttgtaaacggtatcgtagaaagagcgactggtttttatcgagtaaacaatgggta 7697
Query: 147 ttaaggagaatcgtgacgttcatatttctaatttaaggctaaaggccttggctgtggtga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7698 ttaaggagaatcgtgacgttcatatttctaatttaaggctaaaggccttggctgtggtga 7757
Query: 207 cagttttgttgtttttatgtggtttgcatttatccagatggtcaaggaccttgaaagata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7758 cagttttgttgtttttatgtggtttgcatttatccagatggtcaaggaccttgaaagata 7817
Query: 267 atcagactgcaagtgaaccattgtgtccaaacgcaccaaatttgaaaccgccttcataca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7818 atcagactgcaagtgaaccattgtgtccaaacgcaccaaatttgaaaccgccttcataca 7877
Query: 327 tcaatgataactcgaccttgnaaatgatcacacacgatgtcgaatatcgtagcgatgccg 386
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 7878 tcaatgataactcgaccttggaaatgatcacacacgatgtcgaatatcgtagcgatgccg 7937
Query: 387 ttgagaaactattaggatccgttagaattcctactgaatcgtatgattctcatctagatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938 ttgagaaactattaggatccgttagaattcctactgaatcgtatgattctcatctagatc 7997
Query: 447 ctattgaatttccttaagtatatgaaaacttcacagtgttacatgactatttccgttaga 506
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7998 ctattgaatttcctaaggtatatgaaaacttcacagtgttacatgactatttccgtaaga 8057
Query: 507 cgtaccctgcagtgcattagattttgaaacttgatgaaactaaattcaattccaattttg 566
||||||||||||||||| ||| ||||||||||||||||||||||| ||| | ||| ||||
Sbjct: 8058 cgtaccctgcagtgcataagactttgaaacttgatgaaactaaatacaaatacaa-tttg 8116
Query: 567 gtttacgtttggggaaggggaaagatgcttattttaaagccctttagtttta 618
||||||||||||| ||||||||||||| || ||||||| ||||||||||||
Sbjct: 8117 gtttacgtttggg--aggggaaagatgc-tagtttaaag-cctttagtttta 8164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,587
Number of Sequences: 1807
Number of extensions: 12587
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)