BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZA12RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1445                                                        1511   0.0  

>3x_Contig1445 
          Length = 8432

 Score = 1511 bits (762), Expect = 0.0
 Identities = 831/849 (97%), Gaps = 4/849 (0%)
 Strand = Plus / Plus

                                                                        
Query: 53   tcttctagttctagcagccatgaaaccaaagactggagagtagatacccgcgacgaaact 112
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500  tcttctagttctagcaaccatgaaaccaaagactggagagtagatacccgcgacgaaact 559

                                                                        
Query: 113  gtacaagttcataattcttgttgcagaaagatcagtttgattcataccgaccaaaagaat 172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560  gtacaagttcataattcttgttgcagaaagatcagtttgattcataccgaccaaaagaat 619

                                                                        
Query: 173  tgtgtaaaggtaaccagctgccattacataaacgaaacagaccaatatcatcatccacat 232
            ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 620  tgtgtaaaggtaaccagctgccattacataaacgaaacagaccaagaacatcatccacat 679

                                                                        
Query: 233  tggagcccaaataccacggtccttcaacaacttgaatggagcaaatggagccttagccca 292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  tggagcccaaataccacggtccttcaacaacttgaatggagcaaatggagccttagccca 739

                                                                        
Query: 293  ttgactttcccagtaaatggtgacaggaacaaggaaaaccccaagaactaacggtccgat 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  ttgactttcccagtaaatggtgacaggaacaaggaaaaccccaagaactaacggtccgat 799

                                                                        
Query: 353  gatcttaccagttttccattcgttctcaataccaccagcaattgtcaatggaacaaggat 412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  gatcttaccagttttccattcgttctcaataccaccagcaattgtcaatggaacaaggat 859

                                                                        
Query: 413  gcaacccatagatgctgttaacaagagtaaaccaatgatatcaagtttccaaaacaattg 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  gcaacccatagatgctgttaacaagagtaaaccaatgatatcaagtttccaaaacaattg 919

                                                                        
Query: 473  gaccaaagtttgaatgagaccatgggtttgatagaaagtcttttcttgtttcaattccat 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  gaccaaagtttgaatgagaccatgggtttgatagaaagtcttttcttgtttcaattccat 979

                                                                        
Query: 533  ccactctggagtcttgcttgccttctacctcatatgaagtacacaaacgattaatgggat 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  ccactctggagtcttgcttgccttctacctcatatgaagtacacaaacgattaatgggat 1039

                                                                        
Query: 593  acaacttaaggggaagatgaatgcccacattgcaatgttccaagaccaattntccaatgg 652
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1040 acaacttaaggggaagatgaatgcccacattgcaatgttccaagaccaattttccaatgg 1099

                                                                        
Query: 653  gttggctacctcgacgatgttaccggaaacccacatgttaatgatagctggccaagcagg 712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 gttggctacctcgacgatgttaccggaaacccacatgttaatgatagctggccaagcagg 1159

                                                                        
Query: 713  aacaaagttgtacaacactctccatctcaacgaaaaagtatcggacaggaac-aagttac 771
            |||||||||||||||||||||||||||||||||| |  ||||||||| |||| |||| ||
Sbjct: 1160 aacaaagttgtacaacactctccatctcaacgaagagttatcggacaagaacaaagtaac 1219

                                                                        
Query: 772  tttgaacattacaccaac-agtcccacgttatagaaaacggacccggcgcaatatttttg 830
            ||  | |||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1220 ttgaagcattacaccaacaagtcccacgttatagaaaacggacccggcgcaatatttctg 1279

                                                                        
Query: 831  aatatcatacgcttgcgattg-atcacggtaccaacaacgt-aaacacaatggcgacgat 888
            ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 1280 aatatcatacgcttgcgattgaatcacggtaccaacaacgtaaaacacaatggcaacgat 1339

                     
Query: 889  cattaaact 897
            |||||||||
Sbjct: 1340 cattaaact 1348


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6573
Number of Sequences: 1807
Number of extensions: 6573
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)