BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB01RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 1227 0.0
>3x_Contig1607
Length = 10159
Score = 1227 bits (619), Expect = 0.0
Identities = 697/715 (97%), Gaps = 6/715 (0%)
Strand = Plus / Minus
Query: 50 taatcaaacgctgtgaagatcttgatgaaccaattcctcatgatgagcacttatccgata 109
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5010 taatcaaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgata 4951
Query: 110 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 4891
Query: 170 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4890 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 4831
Query: 230 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4830 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 4771
Query: 290 ttttttctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4770 ttttttctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgt 4711
Query: 350 tgtatcatgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtgga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4710 tgtatcatgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtgga 4651
Query: 410 aatgaaaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagagga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 aatgaaaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagagga 4591
Query: 470 accgtgattcttaaaggtgcgtaacaaatctccagatgttgtccataatttgatttcttt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4590 accgtgattcttaaaggtgcgtaacaaatctccagatgttgtccataatttgatttcttt 4531
Query: 530 cgtcccagttgctataattgaagcgtgttcgtgtacttgcatacttgtcatggtactgcc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4530 cgtcccagttgctataattgaagcgtgttcgtgtacttgcatacttgtcatggtactgcc 4471
Query: 590 tagcttctt-cctgggtca-cttcatcagtgaacgtgcaaacaggtttatcagctctgat 647
||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4470 tagcttcttccctggttcaccttcatcagtgaacgtgcaaacaggtttatcagctctgat 4411
Query: 648 gtcccataaggcaccacccccattgtttgtggccgttgactagttcacggtaaacacctt 707
|||||||| |||| || ||||||||||||| |||| ||||||||||||||||| |||| |
Sbjct: 4410 gtcccatagggcaacaaccccattgtttgt-gccgctgactagttcacggtaaccacc-t 4353
Query: 708 ttttgaagg-ggatattggttcaccattgaaccaacaggactgttttcacttttt 761
|||||||| ||||||| ||||||| ||| |||||||||||||| |||||||||
Sbjct: 4352 ctttgaaggtggatatt-gttcacccatgacccaacaggactgttatcacttttt 4299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7618
Number of Sequences: 1807
Number of extensions: 7618
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)