BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB02FM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1279 0.0
>3x_Contig1759
Length = 25622
Score = 1279 bits (645), Expect = 0.0
Identities = 706/721 (97%), Gaps = 4/721 (0%)
Strand = Plus / Plus
Query: 88 aaagtagagcaagataccaaggcatccagtgctattatagtaacgtttgagaaagaagac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18069 aaagtagagcaagataccaaggcatccagtgctattatagtaacgtttgagaaagaagac 18128
Query: 148 cacactctagggaatttgattagagccgaacttttagaagatgaaggagttctttttgca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18129 cacactctagggaatttgattagagccgaacttttagaagatgaaggagttctttttgca 18188
Query: 208 gcttataaggtagagcatccgttatttgccaagtttaaaatgagaattcagactgtggaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18189 gcttataaggtagagcatccgttatttgccaagtttaaaatgagaattcagactgtggaa 18248
Query: 268 ggatacgatccgaaggatgcgttgaagaacgcatgtaatagcattatcaataagttggct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18249 ggatacgatccgaaggatgcgttgaagaacgcatgtaatagcattatcaataagttggct 18308
Query: 328 cagctgcagtctaacttcgaaacagaatggaatttgcaaacgttggctactgaggattat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18309 cagctgcagtctaacttcgaaacagaatggaatttgcaaacgttggctactgaggattat 18368
Query: 388 ggtatgtaatagtgttggaaattgctcaagtgtattaaacaagtgtcaggtaattcatct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18369 ggtatgtaatagtgttggaaattgctcaagtgtattaaacaagtgtcaggtaattcatct 18428
Query: 448 tttcaaaagaattattgaacctccttcggtttttctctatcccctcttcccttctatgta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18429 tttcaaaagaattattgaacctccttcggtttttctctatcccctcttcccttctatgta 18488
Query: 508 ttattttcatgaactgggttgtgtttcggctat-aaataggagagcgta-tactatccac 565
|||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 18489 ttattttcatgaactgtgttgtgtttcggctataaaataggagagcgtattactatccac 18548
Query: 566 cgtaaagttcaacgttcattgtgtataggactatttcttttgggttttttgggtattatc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18549 cgtaaagttcaacgttcattgtgtataggactatttcttttgggttttttgggtattatc 18608
Query: 626 agtacagaatagtgaccttgtttgcaat-aaaaaacctttgaaggaacaagatattcgaa 684
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 18609 agtacagaatagtgaccttgtttgcaataaaaaaaccttggaaggaacaagatattcgaa 18668
Query: 685 ttttgatatctt-acatctttctaacttgaatacattggtggttacttttaagaaacagt 743
|||||||||||| |||||||||||||||| ||||||| || ||||||||||||| |||||
Sbjct: 18669 ttttgatatcttcacatctttctaacttgtatacatttgttgttacttttaagatacagt 18728
Query: 744 ttttttggtgagggatcttgttaagattcattttttaatttaggttaaattaaacaaatt 803
|||| |||||||||||| |||||||||||| || |||||||| |||||||||||||||||
Sbjct: 18729 ttttctggtgagggatcatgttaagattcaattattaatttatgttaaattaaacaaatt 18788
Query: 804 t 804
|
Sbjct: 18789 t 18789
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8389
Number of Sequences: 1807
Number of extensions: 8389
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)