BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB02RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1056 1487 0.0
>3x_Contig1056
Length = 3113
Score = 1487 bits (750), Expect = 0.0
Identities = 822/839 (97%), Gaps = 7/839 (0%)
Strand = Plus / Minus
Query: 51 gatgaaatagaagaggcaatattaactttgtcaacaaaccactctctcgataaaatggct 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2824 gatgaaatagaagaggcaatattaactttgtcaacaaaccactctctcgataaaatggct 2765
Query: 111 caagatacaatcgtgagcgcactttcgaacatattaagcctcctaaaaatttcagaggag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2764 caagatacaatcgtgagcgcactttcgaacatattaagcctcctaaaaatttcagaggag 2705
Query: 171 ttcaactcaaccactgtaccatcaatgtggcgttccaccgtgcagatgagcattgatgtg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2704 ttcaactcaaccactgtaccatcaatgtggcgttccaccgtgcagatgagcattgatgtg 2645
Query: 231 ctggatcgctttttatatattggcactataccaggagttttggatcgcctattccaactg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 ctggatcgctttttatatattggcactataccaggagttttggatcgcctattccaactg 2585
Query: 291 gggttttctattcccgagcaatatgccaatgatgatgaccttgcagttattggaggtaaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2584 gggttttctattcccgagcaatatgccaatgatgatgaccttgcagttattggaggtaaa 2525
Query: 351 acaataaaaaatgaggagtttgttacttacgactctgatgaggatgatgacatagatgag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2524 acaataaaaaatgaggagtttgttacttacgactctgatgaggatgatgacatagatgag 2465
Query: 411 gttatagagaattataaaacgagaatagaccattcactacgtatgacgaatatctataac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 gttatagagaattataaaacgagaatagaccattcactacgtatgacgaatatctataac 2405
Query: 471 actgctgatgcgtcgtcattaagagatttattagaaggcttgaaagagatcgaaacagaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 actgctgatgcgtcgtcattaagagatttattagaaggcttgaaagagatcgaaacagaa 2345
Query: 531 gttgaaggggaagatttgacgccaaatgaactaaccgtaaacctattaaagcaccaaaga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 gttgaaggggaagatttgacgccaaatgaactaaccgtaaacctattaaagcaccaaaga 2285
Query: 591 caaggtttacgatggctagtgtcaatggaaaaatccagcaaaaggggtggtttattggct 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 caaggtttacgatggctagtgtcaatggaaaaatccagcaaaaggggtggtttattggct 2225
Query: 651 gatgatatgggtcttggtaaaactgttcagagtctcgccttattaatggcaaacaagcca 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 gatgatatgggtcttggtaaaactgttcagagtctcgccttattaatggcaaacaagcca 2165
Query: 711 gaaccgaagtcagcgattaaaacgacattggttgttgcccctgtggctgttttgaga-tg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2164 gaaccgaagtcagcgattaaaacgacattggttgttgcccctgtggctgttttgagagtg 2105
Query: 770 tggaaagac--aatcgctgtcaaaat-aagaaagatgtt-atgttaaaggtgtgatattc 825
||||||||| | ||||||||||||| ||||| |||||| ||||||| | |||||||||
Sbjct: 2104 tggaaagacgaagtcgctgtcaaaataaagaaggatgttaatgttaaggtggtgatattc 2045
Query: 826 gnnagtggtgaaaat-atagcagcaaattcagaatttggaaaaactt-gccgaatacga 882
| ||||||||||| |||||||||||||||||| ||||||| |||| |||||||||||
Sbjct: 2044 ggaggtggtgaaaataatagcagcaaattcagaagttggaaagacttggccgaatacga 1986
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6086
Number of Sequences: 1807
Number of extensions: 6086
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)