BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB03RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 1370 0.0
>3x_Contig1751
Length = 24682
Score = 1370 bits (691), Expect = 0.0
Identities = 833/866 (96%), Gaps = 13/866 (1%)
Strand = Plus / Plus
Query: 48 aaagagcagttgaatttacttttggaaggtttgaaggattctttgaactactatgctgca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2825 aaagagcagttgaatttacttttggaaggtttgaaggattctttgaactactatgctgca 2884
Query: 108 ttgtcattcctatacttgtacctaagtttgtgtcccaatgtgaaaggcttaaaattcacg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2885 ttgtcattcctatacttgtacctaagtttgtgtcccaatgtgaaaggcttaaaattcacg 2944
Query: 168 gtgaaatcaactttaccgattggagctggacttggatctagtgcgtcaatttctgtatgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2945 gtgaaatcaactttaccgattggagctggacttggatctagtgcgtcaatttctgtatgt 3004
Query: 228 cttgctcttgcaatggcaagaatgggcggtcatatctcatgtgataaaagtatctcccaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3005 cttgctcttgcaatggcaagaatgggcggtcatatctcatgtgataaaagtatctcccaa 3064
Query: 288 gaggagaaagagtttatcaatcattgggctttcatcggtgaatgttgtatccatggaact 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3065 gaggagaaagagtttatcaatcattgggctttcatcggtgaatgttgtatccatggaact 3124
Query: 348 ccttctggaatcgataacgctgtggctacatatggtaacgcagttaaattcaaaaggcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3125 ccttctggaatcgataacgctgtggctacatatggtaacgcagttaaattcaaaaggcaa 3184
Query: 408 gaggatggcagcaccaagtttgatcaaataagcaatttcccacaactgccaatggtctta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3185 gaggatggcagcaccaagtttgatcaaataagcaatttcccacaactgccaatggtctta 3244
Query: 468 actaatacaagaattaaaagatccactaaaattcttgtgtctggagtaggtgaccttgtc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3245 actaatacaagaattaaaagatccactaaaattcttgtgtctggagtaggtgaccttgtc 3304
Query: 528 aacagaaagccgttgatcactgaacctattttagaagccatgaaccaagtggctctcagg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3305 aacagaaagccgttgatcactgaacctattttagaagccatgaaccaagtggctctcagg 3364
Query: 588 ggttcagagctattatctgatatctcaaaagacattcattatgatgaattgctagagtta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3365 ggttcagagctattatctgatatctcaaaagacattcattatgatgaattgctagagtta 3424
Query: 648 ataagaa-taatcatgggttgttggttgctattagtgtatcacattcggttctagaagtt 706
||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 3425 ataagaattaatcatgggttgttggttgctataggtgtatcacatccgggtctagaagtt 3484
Query: 707 att-aacagttaagtgatg-attgaaaattggtcaaac-aagc-tactggngctggttgt 762
||| ||||||||||||||| |||||||||||||||||| |||| |||||| |||||| ||
Sbjct: 3485 attaaacagttaagtgatgaattgaaaattggtcaaacaaagcttactggggctggtggt 3544
Query: 763 gggtggatgcgccttcacacttct-aataaggatgtaaatctttctcca--taggaaatt 819
||||||||||||||||||||||| |||||||||||| ||| ||| || || |||||
Sbjct: 3545 -ggtggatgcgccttcacacttctcaataaggatgtagatcattcctcagtaagaaaatt 3603
Query: 820 tcatgaaaag-tac-ttccaactatggat-ccaaattttcg-aaccgnacttggtgntgt 875
||||||||| ||| ||| |||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 3604 ccatgaaaagttacattcaaactatggataccaaattttcgaaaccggacttggtggtgt 3663
Query: 876 agnctgctgttttttgggattaaaaa 901
|| |||||||||| ||| |||||||
Sbjct: 3664 aggctgctgttttgtggatttaaaaa 3689
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6462
Number of Sequences: 1807
Number of extensions: 6462
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)