BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB05FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1100 0.0
>3x_Contig1744
Length = 24119
Score = 1100 bits (555), Expect = 0.0
Identities = 612/626 (97%), Gaps = 4/626 (0%)
Strand = Plus / Minus
Query: 86 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15913 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 15854
Query: 146 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15853 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 15794
Query: 206 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15793 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 15734
Query: 266 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15733 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 15674
Query: 326 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15673 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 15614
Query: 386 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15613 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 15554
Query: 446 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15553 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 15494
Query: 506 tcaacgatagaatgttacgtcaaatcacatttggtcaagcgccaactgaaaatgg-ttca 564
||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct: 15493 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 15434
Query: 565 caaggc-aacaggatttg-catcactgtcgcatcagagttgatggcanttttagcgttgc 622
|||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 15433 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 15374
Query: 623 ctaaggacttgaaagatttgagagagcgtgtcggacgtattgtaaattggctttaactac 682
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 15373 ctaaggacttgaaagatttgagagagcgtgtcggacgtatcgt-aattggctctaactac 15315
Query: 683 aaaaaaggaccttttactgttaacga 708
|||||| |||| | |||||||||||
Sbjct: 15314 gaaaaagaacctataactgttaacga 15289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5783
Number of Sequences: 1807
Number of extensions: 5783
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)