BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB05RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1023 0.0
>3x_Contig1468
Length = 9852
Score = 1023 bits (516), Expect = 0.0
Identities = 545/552 (98%), Gaps = 2/552 (0%)
Strand = Plus / Minus
Query: 65 gccttattgaacgtttcgctaacttcgtttatttcggtaatcaacgaggaaagatttagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3069 gccttattgaacgtttcgctaacttcgtttatttcggtaatcaacgaggaaagatttagt 3010
Query: 125 gacaaagagtttaggttgtcgtcaagcatttccactgtatgataggcttgttgtctcttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3009 gacaaagagtttaggttgtcgtcaagcatttccactgtatgataggcttgttgtctcttt 2950
Query: 185 tgatcattcgttttgcttgtgttgttattgttgctcgaagaaagcacctcagatagcaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2949 tgatcattcgttttgcttgtgttgttattgttgctcgaagaaagcacctcagatagcaga 2890
Query: 245 tcttcagccttttgttcataagaatcgaggaaatactcaagttcagattgttgtctttcg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2889 tcttcagccttttgttcataagaatcgaggaaatactcaagttcagattgttgtctttcg 2830
Query: 305 atatatgagagagactgatctactctattttgagattgttcagcagttaatgtatcagag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2829 atatatgagagagactgatctactctattttgagattgttcagcagttaatgtatcagag 2770
Query: 365 tacaaccgacttatttgttcaccaccttgcattaatactttgtcccactgatttatcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2769 tacaaccgacttatttgttcaccaccttgcattaatactttgtcccactgatttatcttc 2710
Query: 425 ttggcgtaactctcaaagtgatctgcggttccagaaagttgggaggtccattttgatact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2709 ttggcgtaactctcaaagtgatctgcggttccagaaagttgggaggtccattttgatact 2650
Query: 485 aagtcatccaaagtcttattgtcgtaggaaacaggttcgatagtaacgggtttagtagat 544
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2649 aagtcatccaaagtcttattgtcgagggaaacaggttcgatagtaacgggtttagtagat 2590
Query: 545 gtctttgatccagttgtagttttctgc-tagcactttcagttgtttc-ttggtagtatcc 602
||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct: 2589 gtctttgttccagttgtagtttcctgcttagcactttcagttgtttctttggtagtatcc 2530
Query: 603 cgtttcagaccg 614
|||||||||||
Sbjct: 2529 ggtttcagaccg 2518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,430
Number of Sequences: 1807
Number of extensions: 12430
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)