BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZB06FM1.SCF screened BAC_end (957 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1744 496 e-140 >3x_Contig1744 Length = 24119 Score = 496 bits (250), Expect = e-140 Identities = 281/289 (97%), Gaps = 2/289 (0%) Strand = Plus / Minus Query: 84 gctttaagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggt 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15917 gctttaagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggt 15858 Query: 144 cctactttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatg 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15857 cctactttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatg 15798 Query: 204 gatgagttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataactta 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15797 gatgagttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataactta 15738 Query: 264 ctagcagcagccatagataccaggatgtntcatgaggctactcaaaagaagcacgaaacg 323 |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct: 15737 ctagcagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacg 15678 Query: 324 ttttacaagagattggttcccttgtaagaaggttgtcaagatcatttac 372 |||||||||||||||| ||||| |||||||| |||| ||||||||||| Sbjct: 15677 ttttacaagagattgg-tccctgttaagaagggtgtc-agatcatttac 15631 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36,469 Number of Sequences: 1807 Number of extensions: 36469 Number of successful extensions: 4170 Number of sequences better than 1.0e-20: 1 length of query: 957 length of database: 10,358,551 effective HSP length: 16 effective length of query: 941 effective length of database: 10,329,639 effective search space: 9720190299 effective search space used: 9720190299 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)