BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB06RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1255 0.0
>3x_Contig1468
Length = 9852
Score = 1255 bits (633), Expect = 0.0
Identities = 735/761 (96%), Gaps = 7/761 (0%)
Strand = Plus / Minus
Query: 49 ttgacatgcataa-aactttggattatctgtcgactctggatttagataaggttcttcta 107
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5086 ttgacatgcaaaataactttggattatctgtcaactctggatttagataaggttcttcta 5027
Query: 108 agcatggacccaaaggtgtctgtgttgtctcattggaatggagagcctttcaacggagat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 agcatggacccaaaggtgtctgtgttgtctcattggaatggagagcctttcaacggagat 4967
Query: 168 tttgacaagtacacctcgaaatttttaaactcgccagctatcggatctcttctttatttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 tttgacaagtacacctcgaaatttttaaactcgccagctatcggatctcttctttatttt 4907
Query: 228 ttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccatactttctcctat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 ttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccatactttctcctat 4847
Query: 288 gcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttctaacgctatacat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4846 gcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttctaacgctatacat 4787
Query: 348 tcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaagctccttccact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4786 tcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaagctccttccact 4727
Query: 408 gatccctttaaagacattactattttggaaggcttggatctcagcctggacaaagttgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4726 gatccctttaaagacattactattttggaaggcttggatctcagcctggacaaagttgaa 4667
Query: 468 aagaattcatcgataaatggatctctttatgatttttcgaacctggattccctgattgag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 aagaattcatcgataaatggatctctttatgatttttcgaacctggattccctgattgag 4607
Query: 528 cttaagaaacggtctgaaacttacctctcgattacatcaggtcatccaatagatgcccaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4606 cttaagaaacggtctgaaacttacctctcgattacatcaggtcatccaatagatgcccaa 4547
Query: 588 cagctggaaagtc-gctctgagaaagagatcgaaat-attaagaaaacatccaccgnctt 645
||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 4546 cagctgg-aagtcggctctgagaaagagatcgaaataattaagaaaacatccaccgcctt 4488
Query: 646 ccttgcctatcangaaatagcancatttcaaacttctggtcttcattcatggggtcaaat 705
|||||||||||| ||| ||||| |||||||| |||||||||||||||||||| |||| |
Sbjct: 4487 ccttgcctatcaggaattagcaacatttcaactttctggtcttcattcatgggttcaatt 4428
Query: 706 ggntgcagataattgntgttgacagtaaactttctccaattc-aagataccattttattt 764
|| |||||||||||| |||||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 4427 gg-tgcagataattgttgttgacagtaaactttctccaattcaaagatccaattttatat 4369
Query: 765 ggggaatatttggaattcattattcctaaagttaaccaata 805
|| | ||||| |||||||||||||||||||| ||| ||||
Sbjct: 4368 tggaagtattt-gaattcattattcctaaagtaaacgaata 4329
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7319
Number of Sequences: 1807
Number of extensions: 7319
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)