BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB08RM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1530 153 8e-37
>3x_Contig1530
Length = 6216
Score = 153 bits (77), Expect = 8e-37
Identities = 149/173 (86%)
Strand = Plus / Plus
Query: 141 gaatacgaaccgtgaaagcgtggcctaacgatcctttagaccttcggaatttgaagctag 200
|||||| |||| |||||| |||||||| ||||||||||| | ||||||||||| |||||
Sbjct: 4767 gaatacaaaccatgaaagtgtggcctatcgatcctttaggtcctcggaatttgaggctag 4826
Query: 201 aggtgtcagaattttttctatagggataactggcttgtggcagccaagcgttcatagcga 260
||||| ||||| || | | |||||||||||||||||||||| ||||||||||||||||
Sbjct: 4827 aggtgccagaaaagttaccacagggataactggcttgtggcagtcaagcgttcatagcga 4886
Query: 261 cgttgctttttgatccttcgatgtcggatttttctatcattgtgaagcagaat 313
| |||||||||||| |||||||||||| | || ||||||| ||||||||||
Sbjct: 4887 cattgctttttgattcttcgatgtcggctcttcctatcataccgaagcagaat 4939
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,057
Number of Sequences: 1807
Number of extensions: 11057
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)