BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB09FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1057 0.0
>3x_Contig1712
Length = 23668
Score = 1057 bits (533), Expect = 0.0
Identities = 560/565 (99%), Gaps = 3/565 (0%)
Strand = Plus / Plus
Query: 83 gctttgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgat 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11488 gctttgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgat 11547
Query: 143 gatcaaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaaca 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11548 gatcaaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaaca 11607
Query: 203 acggtcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11608 acggtcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgg 11667
Query: 263 gtattcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaaca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11668 gtattcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaaca 11727
Query: 323 agtagatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11728 agtagatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagc 11787
Query: 383 caattgcggtgaacctggagaagtgttttccataacggagctgttttcttcttcagagaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11788 caattgcggtgaacctggagaagtgttttccataacggagctgttttcttcttcagagaa 11847
Query: 443 gtcaataccgtgaccacctctttgtagttgacggtagtacatgaaagcggccttgaatgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11848 gtcaataccgtgaccacctctttgtagttgacggtagtacatgaaagcggccttgaatgc 11907
Query: 503 caattcattggcatcggcaccagaaagaccggaccaaa-tttattttgaccctttggagc 561
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11908 caattcattggcatcggcaccagaaagaccggaccaaattttattttgaccctttggagc 11967
Query: 562 aaatttcaataattgcttcaagatatcttcc-aatcagcacctggaaaagtaccccaaag 620
||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 11968 aaatttcaataattgcttcaagatatcttccaaatcagcacctgg-aaagttacccaaag 12026
Query: 621 ctggtctgtcaaccaaagctctaat 645
|||||||||||||||||||||||||
Sbjct: 12027 ctggtctgtcaaccaaagctctaat 12051
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9268
Number of Sequences: 1807
Number of extensions: 9268
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)