BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB09RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1304 0.0
>3x_Contig429
Length = 1524
Score = 1304 bits (658), Expect = 0.0
Identities = 732/750 (97%), Gaps = 5/750 (0%)
Strand = Plus / Plus
Query: 53 gtggagagttggtagactcattaacttgatcataacttccctgctgaatgatttcgccgt 112
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtggagagtttgttgactcattaacttgatcataacttccctgctgaatgatttcgccgt 668
Query: 113 tttccatgagagtaatggagtccgcaatggagagaacagtaattttatttgttgctaaca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tttccatgagagtaatggagtccgcaatggagagaacagtaattttatttgttgctaaca 728
Query: 173 cctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatcaaatgtttag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatcaaatgtttag 788
Query: 233 cgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcagcacgagaat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcagcacgagaat 848
Query: 293 aaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaataccttttt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaataccttttt 908
Query: 353 caccaactaaagtctggtcaccatctggcaacatagagagatcaatactcaaagcacacg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 caccaactaaagtctggtcaccatctggcaacatagagagatcaatactcaaagcacacg 968
Query: 413 cttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaagatattatctt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 cttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaagatattatctt 1028
Query: 473 taacagtaccattcataatccatggaacctgtgaaacgttggcgacgtcaccgtgaacag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 taacagtaccattcataatccatggaacctgtgaaacgttggcgacgtcaccgtgaacag 1088
Query: 533 ttgcgaaacccttcactctaatcaaatctcctagtagactttgaataagtgcactcttac 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 ttgcgaaacccttcactctaatcaaatctcctagtagactttgaataagtgcactcttac 1148
Query: 593 cactacccactttccccacgatacatgttagttcaccttttcttggc-acaaaatttatg 651
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1149 cactacccactttccccacgatacatgttagttcacc-tttcttggcaacaaaatttatg 1207
Query: 652 tttttcaa-gcaactttatattcaggtttgcgttgccatagaaaagttgcatcgttgact 710
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1208 tttttcaaggcaactttatattcaggtttgcgttgccataagaaagttgcatcgttgact 1267
Query: 711 ttacaactttcgtcaccaattatcttttacttttggttcacgtaaaacggcatcattttg 770
||| || ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1268 ttaacaccttcgtcaccaa-tattctttacttttggttcacgtaaaacggcatcattttg 1326
Query: 771 gaactttttcgtttgtcaaaaatgccaaga 800
||| | |||||| ||||||||||| ||||
Sbjct: 1327 caac-tcttcgttagtcaaaaatgcaaaga 1355
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6801
Number of Sequences: 1807
Number of extensions: 6801
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)