BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB10RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1623 1223 0.0
>3x_Contig1623
Length = 14379
Score = 1223 bits (617), Expect = 0.0
Identities = 656/668 (98%), Gaps = 1/668 (0%)
Strand = Plus / Minus
Query: 63 aggctgacaatgaaggtgtcgaagactacatctctgaacttgaggaacttcatgaagaat 122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 aggctgacaatgaagttgtcgaagactacatctctgaacttgaggaacttcatgaagaat 2019
Query: 123 tggcccaaaagaccacttgttttgcagtttacgcgaagcacgaatttgacaataacttta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 tggcccaaaagaccacttgttttgcagtttacgcgaagcacgaatttgacaataacttta 1959
Query: 183 aagccaatacttccaacattccctattacaacgacttctcaacagaaatgaaaaaatatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 aagccaatacttccaacattccctattacaacgacttctcaacagaaatgaaaaaatatg 1899
Query: 243 ttaacaaattcatcagcaacagctcttcaaattggatacatccttacttccattatccag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 ttaacaaattcatcagcaacagctcttcaaattggatacatccttacttccattatccag 1839
Query: 303 ctgaggttgaggactggaaagtaaagttcaacgtacagcaactggggattgatcaacgat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1838 ctgaggttgaggactggaaagtaaagttcaacgtacagcaactggggattgatcaacgat 1779
Query: 363 ccaacgcatattaccagaaattcttgaaagaacaattgaatctcttgagagtacaaagca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1778 ccaacgcatattaccagaaattcttgaaagaacaattgaatctcttgagagtacaaagca 1719
Query: 423 ccgatgccacaaaacgttcagataatgattttgaatccgtacgaagtagtatgttcaaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718 ccgatgccacaaaacgttcagataatgattttgaatccgtacgaagtagtatgttcaaat 1659
Query: 483 taatgaacggtaaagaagaggaatcaggacctcgtgacagcagtgatatctctactttgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1658 taatgaacggtaaagaagaggaatcaggacctcgtgacagcagtgatatctctactttgc 1599
Query: 543 aagctatgcttcgagcaatatcaacgaaaaatgaaggaaagaagaccgcttctgatcgga 602
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 1598 aagctatgcttcgagcaatatcaacgaaaaatgaaggaaggaagaccgcttctgatcgaa 1539
Query: 603 acgtttaaaaagtgatgtgggaccaaaaataatagaacctactactactaattcaactgt 662
||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 1538 acgttaaaaaagtgatgtggaaccaaaaataatagaacctactactactaatacaactgt 1479
Query: 663 naaaaagcttctgataaattgtcctgaagtgtatctaactttgtatatatttaatttaat 722
||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| | |
Sbjct: 1478 aaaaaagcttctgatagattgtactgaagtgtatctaac-ttgtatatatttaattcagt 1420
Query: 723 atggacac 730
||||||||
Sbjct: 1419 atggacac 1412
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9988
Number of Sequences: 1807
Number of extensions: 9988
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)