BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB11RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1538 0.0
>3x_Contig1426
Length = 8319
Score = 1538 bits (776), Expect = 0.0
Identities = 827/840 (98%), Gaps = 4/840 (0%)
Strand = Plus / Minus
Query: 50 accggtgttcccatatgcaaaccaagataatcggctttcttgc-cgtattgaaatagtcc 108
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1769 accggtgttcccatatgcaaaccaagataatcggctttcttccacgtattgaaatagtcc 1710
Query: 109 atggtttggatgaaacaattccctagtcaataaaaggaaccattctttctttaaaccgcc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 atggtttggatgaaacaattccctagtcaataaaaggaaccattctttctttaaaccgcc 1650
Query: 169 agcatcgattccaggctcattcgagaactccactcttagggattttttcaaatcatgtgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 agcatcgattccaggctcattcgagaactccactcttagggattttttcaaatcatgtgg 1590
Query: 229 atgtcgttgaatggacgttagcgaatcctgtgtcacatggcttcgtcttacctttattcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 atgtcgttgaatggacgttagcgaatcctgtgtcacatggcttcgtcttacctttattcg 1530
Query: 289 gaaatgtacatcgtaaagtttacgagagtccaacgcctttaagaacgcttgctcagcgtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 gaaatgtacatcgtaaagtttacgagagtccaacgcctttaagaacgcttgctcagcgtt 1470
Query: 349 atgttccatcattttcccagtttcgaactccattatggctatcttaacgcctaaggacat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 atgttccatcattttcccagtttcgaactccattatggctatcttaacgcctaaggacat 1410
Query: 409 caaaaaagggtactggcataaggcagtatagtgcgtttcatgtaactgtgtcatggataa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 caaaaaagggtactggcataaggcagtatagtgcgtttcatgtaactgtgtcatggataa 1350
Query: 469 atcgtcaagggtcctccattgctctctattcatcttatgccacatcataaaatcacgttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 atcgtcaagggtcctccattgctctctattcatcttatgccacatcataaaatcacgttt 1290
Query: 529 gtaatcaatgaaatcaattatcatattgtaaaaaaccgagatgtcacattttggctgttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 gtaatcaatgaaatcaattatcatattgtaaaaaaccgagatgtcacattttggctgttc 1230
Query: 589 acaatgagcttgaaagtatatgttcattagctgacacaccgtgcgaatatgccagtcaag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 acaatgagcttgaaagtatatgttcattagctgacacaccgtgcgaatatgccagtcaag 1170
Query: 649 ttcgtatttttcaattctgaacctgctctctaacggtatcttttgcctttcggggtggaa 708
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1169 tccgtatttttcaattctgaacctgctctctaacggtatcttttgccttccggggtggaa 1110
Query: 709 aagat-agatacagntccatctttggtttcatccacaggcgatgattcagttaacaacgt 767
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 aagataagatacagttccatctttggtttcatccacaggcgatgattcagttaacaacgt 1050
Query: 768 tcctgataatcctcgtggtgaatgcggcggnaccgggtcctattttctggaactgantac 827
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 1049 tcctgataatcctcgtggtgaatgcggcgg-accgggtcctattttctggaactgataac 991
Query: 828 tcanatacaagtntaaaatttcccattgcttttgaaaatttcattggatgtaaacgaact 887
||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 990 tcaaatacaagtttaaaatttcccattgcttttg-aaatttcaatggatgtaaacgaact 932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5638
Number of Sequences: 1807
Number of extensions: 5638
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)