BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZB12RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1154 0.0
>3x_Contig1761
Length = 23186
Score = 1154 bits (582), Expect = 0.0
Identities = 689/717 (96%), Gaps = 6/717 (0%)
Strand = Plus / Minus
Query: 48 gaacatgaactgatgacggacggattttgtaaccagacgcaaacatgtgtctcttcaatt 107
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 13074 gaacatgaactgatgacggacggattttgtaaccagacgcaaacatgttt-tcttcaatt 13016
Query: 108 catctttgatttcttggctgacatcagagaataccttgtttagagcagagtcaaaagcat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13015 catctttgatttcttggctgacatcagagaataccttgtttagagcagagtcaaaagcat 12956
Query: 168 ctcttctgaaagagttccattccgaagcgatttctgaggtgttacttgtttcgagagatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12955 ctcttctgaaagagttccattccgaagcgatttctgaggtgttacttgtttcgagagatg 12896
Query: 228 tttggaaaagatgattagtatattgatcttgagaagacacatgaatctgaatgttcatta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12895 tttggaaaagatgattagtatattgatcttgagaagacacatgaatctgaatgttcatta 12836
Query: 288 aatgcaaagattcggcttctaacatccgtaagaagacatctggctctgagcggaaatggg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12835 aatgcaaagattcggcttctaacatccgtaagaagacatctggctctgagcggaaatggg 12776
Query: 348 ctggagttctaccaagagcatatttgatatcttcgtatggggaacctctttgaatctctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12775 ctggagttctaccaagagcatatttgatatcttcgtatggggaacctctttgaatctctt 12716
Query: 408 ttctaccttttgaagtcaatgcaacatccacaatatagtacttgtaaaagtcatctctga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12715 ttctaccttttgaagtcaatgcaacatccacaatatagtacttgtaaaagtcatctctga 12656
Query: 468 tcttttgccttaccttaggatttttagaaagctctagtgcgtagtatttttcgattgttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12655 tcttttgccttaccttaggatttttagaaagctctagtgcgtagtatttttcgattgttt 12596
Query: 528 ctaacgccaatttangattcttgggagaaaatctgaagattcttggcctctggtccttct 587
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 12595 ctaacgccaatttaggattc-tgggagaaaatctgaagatccttggcctctggtccttct 12537
Query: 588 taaatatttgctactgaaataataggtttcaagaaaggttgatcaacaaccggatgaag- 646
||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||
Sbjct: 12536 aaaatatttgctactgaatcagtaggtttcaatgaagggtgatcaacaaccggatgaagt 12477
Query: 647 tgatgctcaaccctgatattttaacc-acttgttctgca-taattccaatatcattgaaa 704
||||||||| | |||||||||| ||| |||||||||||| |||| ||| ||||||||| |
Sbjct: 12476 tgatgctcagcactgatattttcaccaacttgttctgcagtaatcccagtatcattgata 12417
Query: 705 gcttggaataaggcactggccttgaacttttcttaccttggattttttcaaaggctt 761
|||||| |||| |||||||||||||||||||| || ||| || ||||||||| ||||
Sbjct: 12416 gcttggtataatgcactggccttgaacttttcataactt-gagtttttcaaatgctt 12361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7607
Number of Sequences: 1807
Number of extensions: 7607
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)