BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZC01FM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1698                                                        1011   0.0  

>3x_Contig1698 
          Length = 21001

 Score = 1011 bits (510), Expect = 0.0
 Identities = 541/550 (98%), Gaps = 1/550 (0%)
 Strand = Plus / Plus

                                                                         
Query: 87    aatccagaatttgttgaagtaatttctgaatatctgaagtcgccacttcgaggattttcg 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12679 aatccagaatttgttgaagtaatttctgaatatctgaagtcgccacttcgaggattttcg 12738

                                                                         
Query: 147   taaagatctcaacatcaacaatgacattttctactagacatctttgaagcaactgcctac 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12739 taaagatctcaacatcaacaatgacattttctactagacatctttgaagcaactgcctac 12798

                                                                         
Query: 207   aaaccgtttcataataattatctatcatatgcaaacacttgataacatcttcggctgaaa 266
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12799 aaaccgtttcagaataattatctatcatatgcaaacacttgataacatcttcggctgaaa 12858

                                                                         
Query: 267   ctatttcgcttaaaactcccagcgcaatggttctgcgctgtgatttttcagaagcagcaa 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12859 ctatttcgcttaaaactcccagcgcaatggttctgcgctgtgatttttcagaagcagcaa 12918

                                                                         
Query: 327   ttgtcttgaataaatcaaaggcatatttgctgaattcatcatactcaatatcgagctgac 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12919 ttgtcttgaataaatcaaaggcatatttgctgaattcatcatactcaatatcgagctgac 12978

                                                                         
Query: 387   tataaatttgttgaaggccattaacaacgtataagaataagtcaaatgaatcgctgtcta 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12979 tataaatttgttgaaggccattaacaacgtataagaataagtcaaatgaatcgctgtcta 13038

                                                                         
Query: 447   tattaggcaactcaccatcaaacaaatgagaaaaataacttttcttaacgacacgtttct 506
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13039 tattaggcaactcaccatcaaacaaatgagaaaaataacttttcttaacgacacgtttct 13098

                                                                         
Query: 507   taaacttcatatcacctaatgcataattacccaccttggacaataggttatcaatagttt 566
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13099 taaacttcatatcacctaatgcataattacccaccttggacaataggttatcaatagttt 13158

                                                                         
Query: 567   tctgtacctgcccagaaagtaaactgccctgacatcgtttcctttagacggaaaatatta 626
              ||||||||||  ||||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct: 13159 cctgtacctgcgtagaaagtaaactg-cctgacatcgttttctttagacggaaaataata 13217

                       
Query: 627   ccagttacat 636
              ||| |||||
Sbjct: 13218 gcagctacat 13227


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8439
Number of Sequences: 1807
Number of extensions: 8439
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)