BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC01RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 1076 0.0
>3x_Contig1190
Length = 5329
Score = 1076 bits (543), Expect = 0.0
Identities = 593/607 (97%), Gaps = 2/607 (0%)
Strand = Plus / Plus
Query: 52 cttgaagagtacgacactggaatactaaattaggcgattgaatacatggaatactcgtat 111
|||||||||| ||||||| |||||||| || ||| ||||||||||||||||||||||||
Sbjct: 4721 cttgaagagttcgacactagaatactagataaggttattgaatacatggaatactcgtat 4780
Query: 112 aagtacaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4781 aagtacaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatt 4840
Query: 172 tcgttagatttattattagctgctgattatttgggtatatgatgcgatactaattgctag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4841 tcgttagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctag 4900
Query: 232 atagaacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcact 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4901 atagaacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcact 4960
Query: 292 ctctttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4961 ctctttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtc 5020
Query: 352 ccgttcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaa 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5021 ccgttcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaa 5080
Query: 412 taaggtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5081 taaggtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtga 5140
Query: 472 tagttcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5141 tagttcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccag 5200
Query: 532 tccacatgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataacc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5201 tccacatgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataacc 5260
Query: 592 ccacttagcacgacaaggaataacgctggaatgtaaatgaaggtttgttcttgaaacaat 651
||||||||||||||||||||||||||| ||||||||| ||| ||||||||| | |||||
Sbjct: 5261 ccacttagcacgacaaggaataacgct-gaatgtaaaggaa-gtttgttctgtagacaat 5318
Query: 652 actgttt 658
|||||||
Sbjct: 5319 actgttt 5325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7074
Number of Sequences: 1807
Number of extensions: 7074
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)