BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC02FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 1130 0.0
>3x_Contig1464
Length = 11693
Score = 1130 bits (570), Expect = 0.0
Identities = 655/678 (96%), Gaps = 4/678 (0%)
Strand = Plus / Minus
Query: 115 gattcttcaatgttttgaatttcccaatttggtcaaaatgtaaatacatagaacatcgat 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4718 gattcttcaatgttttgaatttcccaatttggtcaaaatgtaaatacatagaacatcgat 4659
Query: 175 caaaactggaaaaccgaacaaaagcagagtagtagaattaccttcaacaactctctgttg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4658 caaaactggaaaaccgaacaaaagcagagtagtagaattaccttcaacaactctctgttg 4599
Query: 235 aatgccctttatccatcataaccagcgccacaaacatcgatgacaagatgcaaacaacac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 aatgccctttatccatcataaccagcgccacaaacatcgatgacaagatgcaaacaacac 4539
Query: 295 ctgtatcggaagtaccagaccctactgactggtttaagattgacaccggttaacttgaaa 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4538 ctgtatcggaagtaccagaccctactgactg-tttaagattgacaccggttaacttgaaa 4480
Query: 355 actttaagatcacctctaaagcaaggtcagatgaatattgagacaaatgacagcttatac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4479 actttaagatcacctctaaagcaaggtcagatgaatattgagacaaatgacagcttatac 4420
Query: 415 aaagaaaactttaatcttatatcccgacaactacaaaacctattgagtgaacttgatgtg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4419 aaagaaaactttaatcttatatcccgacaactacaaaacctattgagtgaacttgatgtg 4360
Query: 475 atatatcgagaggttggatactcgaatatagagatatcaaggaaggagaaacagattttc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4359 atatatcgagaggttggatactcgaatatagagatatcaaggaaggagaaacagattttc 4300
Query: 535 cacaatctatcaaattcgatttcgaagttcttcgatgaggctaatgcggaacgagatatg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4299 cacaatctatcaaattcgatttcgaagttcttcgatgaggctaatgcggaacgagatatg 4240
Query: 595 cttacaaaagaatatcaggttggtcaacatagcctacagtgtatgctttatgccatcaat 654
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4239 cttacaaaagaatatcaggttggtcaacatagcctacagtgtatgcttaatgccatcaat 4180
Query: 655 gaatccgaagggagtatatacgataccccgatctgtttatgagaaacagtgtacttggaa 714
| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 4179 g-atccgaaaggagtatatacgata-cccgatctgtttatgagaaacagtgtac-tggag 4123
Query: 715 acatttggtcaaagcatttttgaagacaactgtttcagttcttaaaggacatcagccttc 774
|||| || |||| ||| | || |||||||||| ||| || |||| ||||||||||
Sbjct: 4122 acatctgctcaagcaattatagatgacaactgttcaagtcctcaaagaacatcagcctca 4063
Query: 775 ctacttaacaaatggaaa 792
||||||||||||| ||||
Sbjct: 4062 ctacttaacaaattgaaa 4045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7131
Number of Sequences: 1807
Number of extensions: 7131
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)