BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC02RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1355 1590 0.0
>3x_Contig1355
Length = 8652
Score = 1590 bits (802), Expect = 0.0
Identities = 857/869 (98%), Gaps = 5/869 (0%)
Strand = Plus / Plus
Query: 55 gttacctttttgaacttttaacattcagtgtctgatttcattacccggataatgctcatg 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6751 gttacctttttgaacttttaacattcagtgtctgatttcattacccggataatgctcatg 6810
Query: 115 tgacttgtccgattgattatctaatccgccatatatggtaaaaatgttcgaacgaagagt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6811 tgacttgtccgattgattatctaatccgccatatatggtaaaaatgttcgaacgaagagt 6870
Query: 175 ccatatggagagctgctggaagttgaattacaggctcgatagagttctcctagagataaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6871 ccatatggagagctgctggaagttgaattacaggctcgatagagttctcctagagataaa 6930
Query: 235 taagaagttggtacattgtatagaatatcaaaaccaccagatcagctttcaatttcaact 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6931 taagaagttggtacattgtatagaatatcaaaaccaccagatcagctttcaatttcaact 6990
Query: 295 gattgctgagtttgcaatatcagtcacgtggtaattttatatctcctatcacctctctta 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6991 gattgctgagtttgcaatatcagtcacgtggtaattttatatctcctatcacctctctta 7050
Query: 355 tactcttcatccttaacttagggcagtaaaatgaaaagcggacagtaggttcagtttgaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7051 tactcttcatccttaacttagggcagtaaaatgaaaagcggacagtaggttcagtttgaa 7110
Query: 415 catgaggtctcattaaagctagcagctggatccctcacattgcagcattaccgttccacg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7111 catgaggtctcattaaagctagcagctggatccctcacattgcagcattaccgttccacg 7170
Query: 475 tatgatgatgtcaaagcttccctttttgttaaggggagactttgcacgttggaaacgaaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 tatgatgatgtcaaagcttccctttttgttaaggggagactttgcacgttggaaacgaaa 7230
Query: 535 atttctcactgaattgatggagagctgaaaaaaatgtgaaataacaaaatgtgcaaaata 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7231 atttctcactgaattgatggagagctgaaaaaaatgtgaaataacaaaatgtgcaaaata 7290
Query: 595 taatgtttgatacggacatactgatgcactagattggaaattcaggtgcatagtaaaacc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7291 taatgtttgatacggacatactgatgcactagattggaaattcaggtgcatagtaaaacc 7350
Query: 655 ctacttcactctggtattgtcataacccaagtgctcattgaaatatagtgttacaacgat 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7351 ctacttcactctggtattgtcataacccaagtgctcattgaaatatagtgttacaacgat 7410
Query: 715 tcaattgtgttatcgtgtttacgctggtgttg-aaaaaccaagtacgttgatcattttgc 773
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7411 tcaattgtgttatcgtgtttacgctggtgttgaaaaaaccaagtacgttgatcattttgc 7470
Query: 774 gttcttagttaatcactggttnttatcagactttga-ttgacactatttgtaattaaaga 832
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 7471 gttcttagttaatcactggtttttatcagactttgatttgacactatttgtaattaaaga 7530
Query: 833 c-attatataatctcaacagcaatttgtaattttaatttctgtttgac-aaaacacaatc 890
| || ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 7531 caataatatatcttcaacagcaatttgtaattttaatttctg-ttgacaaaaacacaatc 7589
Query: 891 cgttatagtctcacttcattttggcataa 919
|||||||||||||||||||||||||||
Sbjct: 7590 gattatagtctcacttcattttggcataa 7618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7119
Number of Sequences: 1807
Number of extensions: 7119
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)