BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC03FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1622 771 0.0
>3x_Contig1622
Length = 13445
Score = 771 bits (389), Expect = 0.0
Identities = 437/449 (97%), Gaps = 4/449 (0%)
Strand = Plus / Minus
Query: 87 actgtccaaggtttttaatgcaacttgatataatagcaacatgatactactttgtatact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 actgtccaaggtttttaatgcaacttgatataatagcaacatgatactactttgtatact 389
Query: 147 tgtccaaataaatcttggtccaacaccgctgaataatccagcgagaccttctgtcttgta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtccaaataaatcttggtccaacaccgctgaataatccagcgagaccttctgtcttgta 329
Query: 207 aacggtcatcatgcctttcgtaatggaatttgtcaacgtttgctgctttaaattctgaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aacggtcatcatgcctttcgtaatggaatttgtcaacgtttgctgctttaaattctgaga 269
Query: 267 actattttcagggatatctggtagctgtgtctggattcttgtctttacaacatctaatgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actattttcagggatatctggtagctgtgtctggattcttgtctttacaacatctaatgg 209
Query: 327 agttgttatgataccagcaagaccacctgcagcagcaccggtaatttatttcgttactca 386
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 208 agttgttatgataccagcaagaccacctgcagcagcaccggtaa-ttatttcgttactca 150
Query: 387 gagataaatcttcatcanacgttttattctctactgcgaantgcagttgtctaaatttct 446
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 149 gagataaatcttcatcaaacgttttattctctactgcgaatgcaagttgtctaaatttct 90
Query: 447 catannatgcaaattgtaacccag-aaacggtagatcccgactcaaggttgctttat-ac 504
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 89 cataaaatgcaaattgtaacccagaaaacggtagatcccgactcaaggttgctttataac 30
Query: 505 caaagaataaagtt-gccattcttctcgc 532
|||||||||||||| ||||| ||||||||
Sbjct: 29 caaagaataaagttggccatccttctcgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8360
Number of Sequences: 1807
Number of extensions: 8360
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)