BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC03RM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig652 1235 0.0
>3x_Contig652
Length = 2532
Score = 1235 bits (623), Expect = 0.0
Identities = 688/700 (98%), Gaps = 9/700 (1%)
Strand = Plus / Plus
Query: 47 gcgttaaattgcgaaaacatccggaattttattaatgctgttggtttccccgataggttc 106
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gcgttaaattgtgaaaacatccggaattttattaatgctgttggtttccccgataggttc 1893
Query: 107 aaaagtattacttctcaagcggagtacaaaggcgctaccgcggttatatttgcagcgcta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 aaaagtattacttctcaagcggagtacaaaggcgctaccgcggttatatttgcagcgcta 1953
Query: 167 tttagagcgaaggactataaatcagttatcatgttcaatgaaatctgtccatgcctagac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 tttagagcgaaggactataaatcagttatcatgttcaatgaaatctgtccatgcctagac 2013
Query: 227 atttcattgatcttgaaatctttcattcgcctaggtgactatgataattatctttctcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 atttcattgatcttgaaatctttcattcgcctaggtgactatgataattatctttctcaa 2073
Query: 287 gaagcgaggtttaaagattctatgtcgcctgctgcccttggcgtaattcgatccgaatat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 gaagcgaggtttaaagattctatgtcgcctgctgcccttggcgtaattcgatccgaatat 2133
Query: 347 ctaataaatcaaaagaaatttgaagatgcaatgttactgcttaaatctttcccagatgtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 ctaataaatcaaaagaaatttgaagatgcaatgttactgcttaaatctttcccagatgtt 2193
Query: 407 atcgatcatcaaacctatgacaagtactcttttgcattatttttatcatcattctccgga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 atcgatcatcaaacctatgacaagtactcttttgcattatttttatcatcattctccgga 2253
Query: 467 actcctgttgatgtagacttccaaatcgaaaacacgttgcagttagcgaacgtgctctca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2254 actcctgttgatgtagacttccaaatcgaaaacacgttgcagttagcgaacgtgctctca 2313
Query: 527 gcccaacattctttccacaatatgattcactgttacgaaagcatgaccaaaggaaaggaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 gcccaacattctttccacaatatgattcactgttacgaaagcatgaccaaaggaaaggaa 2373
Query: 587 ntttcacaagacttgaagttgaactttggcattaagatggaaattacccaacanattctc 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2374 ttttcacaagacttgaagttgaactttggcattaagatggaaattacccaacaaattctc 2433
Query: 647 aacaatatttgaagattctatgcaattttcttgatttaaaatgatactttctattataga 706
||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct: 2434 aacaata-ttgaagattctatgcaa-tttcttgattt-aaatgatac-ttctattataga 2489
Query: 707 gaaactattttactcc-aactcgaaaaactacatgagatt 745
| ||||| ||||||| |||||| ||||||||||||||||
Sbjct: 2490 g-aacta--ttactccaaactcg-aaaactacatgagatt 2525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7872
Number of Sequences: 1807
Number of extensions: 7872
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)