BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC04RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1103 985 0.0
>3x_Contig1103
Length = 3850
Score = 985 bits (497), Expect = 0.0
Identities = 579/599 (96%), Gaps = 7/599 (1%)
Strand = Plus / Plus
Query: 52 gtagcccgtatatgagaattgttaaaggaattgtaataatagcgaggaatctttcagttg 111
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaatctttcagttg 483
Query: 112 caaatcaggttatacctcaaaatattctactacctaacacattcctggcatggtatttat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caaatcaggttatacctcaaaatattctactacctaacacattcctggcatggtatttat 543
Query: 172 ccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatatggtctagtat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatatggtctagtat 603
Query: 232 gtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagctgttttgatg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagctgttttgatg 663
Query: 292 atcatatgaatttcatggtagaaatgctgcggtttattgatgatnatggcattgttaatg 351
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 664 atcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggcattgttaatg 723
Query: 352 cgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctcatctttactca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctcatctttactca 783
Query: 412 atgatattagatctttggaagttatcgacaaactactactgcggggaataattgcacaga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atgatattagatctttggaagttatcgacaaactactactgcggggaataattgcacaga 843
Query: 472 aaactgagattgactttgcttgttgaagaagaagatgaggataaaaatctttttttcctt 531
|||||||||||||| ||||| |||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 844 aaactgagattgac-ttgctcgttgaagaggaagatgaggataaaaatc-tttcttcctt 901
Query: 532 agctactattcaactataaatatttaaacagttagtaacacatgaatgcttccgggtctt 591
|||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 902 agctactattcaactaaaaatattaaaacagttagtaacacatgaatgctt-cgggtctt 960
Query: 592 atttgaaaaacctttacaaaagaattttggttttgctttcttttcaacaaaatgttcaa 650
|| || |||||||| ||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 961 atatg-aaaaccttacgaaaagaa-tatggttttgctt--ctttcaacaaaatgttcaa 1015
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,733
Number of Sequences: 1807
Number of extensions: 10733
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)