BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC05FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1068 0.0
>3x_Contig1640
Length = 15521
Score = 1068 bits (539), Expect = 0.0
Identities = 615/637 (96%), Gaps = 3/637 (0%)
Strand = Plus / Minus
Query: 85 ctttaacaattgatttcccttctgtagtccatcgataaatttcttttctattagtttaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5314 ctttaacaattgatttcccttctgtagtccatcgataaatttcttttctattagtttaaa 5255
Query: 145 ttcaatggattggaccattgtctccaaatttattatctgatcagaacactgttccaataa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5254 ttcaatggattggaccattgtctccaaatttattatctgatcagaacactgttccaataa 5195
Query: 205 tcgttcctgatattgtatccgctttaacaacaatctcgcacgattatcctgtttcaattg 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5194 tcgttcctgataatgtatccgctttaacaacaatctcgcacgattatcctgtttcaattg 5135
Query: 265 cttccccttaagtttaatgcaaagagtccttaactcagctctttcgacccctatcaaatt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 cttccccttaagtttaatgcaaagagtccttaactcagctctttcgacccctatcaaatt 5075
Query: 325 ttcagtacgacgagaatatctatgtaactcatctttagccatcttcagttgcaacattgc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 ttcagtacgacgagaatatctatgtaactcatctttagccatcttcagttgcaacattgc 5015
Query: 385 cttatcggactctgtaacttttattcgacttccttgttgtcccatctcgtgaatatatgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 cttatcggactctgtaacttttattcgacttccttgttgtcccatctcgtgaatatatgt 4955
Query: 445 gcttgtttttatactaccaaaagtactaacaagtgtagctattgaactaccactttcgat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 gcttgtttttatactaccaaaagtactaacaagtgtagctattgaactaccactttcgat 4895
Query: 505 tccgttactaactccaaacncttctccaatatcaaaaagttcgttgacaataagtcttca 564
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 4894 tccgttactaactccaaacccttctccaatatcaaaaagtcgtttgacaataagtcttca 4835
Query: 565 actgntgggcttttcttatagatgcatagaatggatattcactgtttcgataacgcataa 624
|||| |||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4834 actgttgggctttcctcatagatgcatagaatggatattcactgtatcgataacgcataa 4775
Query: 625 tggacctttggaatcgacattaagatttcaggatatttttttttaatattaccccagaca 684
||||||||||| |||||||| ||||||||| |||| | | ||| ||||||| ||||||||
Sbjct: 4774 tggacctttgg-atcgacataaagatttcaagatagtatatttaaatatta-cccagaca 4717
Query: 685 aagttacatgcaaccccttttggcaaaaaaagatgaa 721
|||| |||||||| ||| |||| || |||||||||||
Sbjct: 4716 aagtcacatgcaa-cccatttgccagaaaaagatgaa 4681
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9110
Number of Sequences: 1807
Number of extensions: 9110
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)