BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC05RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1518 0.0
>3x_Contig1785
Length = 37935
Score = 1518 bits (766), Expect = 0.0
Identities = 801/810 (98%), Gaps = 2/810 (0%)
Strand = Plus / Plus
Query: 62 tgaataacttggaaacatttattaaaccatatgaaatttctgtgaagaaggagcaaaatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33353 tgaataacttggaaacatttattaaaccatatgaaatttctgtgaagaaggagcaaaatg 33412
Query: 122 atgcgatcaagcaattaagttccgagtttgcatcaaaggcaaaagtaggctctaactccg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33413 atgcgatcaagcaattaagttccgagtttgcatcaaaggcaaaagtaggctctaactccg 33472
Query: 182 atgaccagccattacttttgacaaatggcgcgattggctcacaggcaactgggttttcta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33473 atgaccagccattacttttgacaaatggcgcgattggctcacaggcaactgggttttcta 33532
Query: 242 actactgaacttgagggggtttagtaagttattttccatcgcactttcgatgctgtcatg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33533 actactgaacttgagggggtttagtaagttattttccatcgcactttcgatgctgtcatg 33592
Query: 302 ttaatttgatgaaccgtatgtataatatgtaataagaatgcaattacgttgagataaata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33593 ttaatttgatgaaccgtatgtataatatgtaataagaatgcaattacgttgagataaata 33652
Query: 362 aaccaaccagaataaccaactatttcaataaaaaagattttaaagtgcctacattatgtg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33653 aaccaaccagaataaccaactatttcaataaaaaagattttaaagtgcctacattatgtg 33712
Query: 422 cttataaaaatacaacccaaaataacgataaactatccagagacagaaaaatcttactct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33713 cttataaaaatacaacccaaaataacgataaactatccagagacagaaaaatcttactct 33772
Query: 482 ttgtaattgctattacgatctgccttagctgctttcttttctaagtcatcccagtcatca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33773 ttgtaattgctattacgatctgccttagctgctttcttttctaagtcatcccagtcatca 33832
Query: 542 ccttcgtcatcttctgatccatcggcgaaatcatctgacccttcatcactgaatttttcg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33833 ccttcgtcatcttctgatccatcggcgaaatcatctgacccttcatcactgaatttttcg 33892
Query: 602 tcatccgaataatcctcttcttcttcagagtacacttcctcatcagatggatcctcatca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33893 tcatccgaataatcctcttcttcttcagagtacacttcctcatcagatggatcctcatca 33952
Query: 662 gatgcctcgtattctgaaatttctttctcgctctcatcagatctttcatcatcggatcca 721
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 33953 gatgcctcgtattctgaaatttcttcctcgctctcatcagatctttcatcatcggatcca 34012
Query: 722 gttgccaagaacgacca-ccaccatccaaaaagaattgatgaagatcatcttgtagcgac 780
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 34013 gttgccaagaacgaccacccaccatccaaaaagaattgatgaggatcatcttgtagcgac 34072
Query: 781 ttcatgattgtcggacagtttcaagttaattgtagaaccagtatatggaatatcaacctc 840
||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 34073 ttcatgattgtcgaccag-ttcaagttaattgtagaaacagtatatggaatatcaacatc 34131
Query: 841 tgttaaccatgtcttaatgaaatcaagttg 870
||||||||||||||||||||| ||||||||
Sbjct: 34132 tgttaaccatgtcttaatgaattcaagttg 34161
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8718
Number of Sequences: 1807
Number of extensions: 8718
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)