BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC06FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 1009 0.0
>3x_Contig1767
Length = 23302
Score = 1009 bits (509), Expect = 0.0
Identities = 598/621 (96%), Gaps = 5/621 (0%)
Strand = Plus / Minus
Query: 92 cttatatataaagctttttccctcgctggaagattttcaagacttcgtcttttagaagcg 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18499 cttatatataaagctttttccctcgctggaagattttcaagacttcgtcttttagaagcg 18440
Query: 152 aaaaggccgaaacgtagtattattggttcgtatacagtgatactggtagtgaaacttact 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18439 aaaaggccgaaacgtagtattattggttcgtatacagtgatactggtagtgaaacttact 18380
Query: 212 tttatttatttagttgcacgtgatctaaaatggttagataatatatgctttacctacttc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18379 tttatttatttagttgcacgtgatctaaaatggttagataatatatgctttacctacttc 18320
Query: 272 tttctgtggtatattttgttcaagaacaag-ttagaacttcggccttgaacccacgggat 330
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 18319 tttctgtggtatattttgttcaagaacaaggttagaacttcggccttgaacccacgggat 18260
Query: 331 tcgtcgatgttagcgattttctctcttaagttggaagcggtttcttcttcgtacttgtgg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18259 tcgtcgatgttagcgattttctctcttaagttggaagcggtttcttcttcgtacttgtgg 18200
Query: 391 tagatgtcttggatgttcatttcgttgaatacagctctacatttttgttccttttcagaa 450
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 18199 tagatgtcttggatgttcaattcgttgaatacagctctacatttttgttccttttcagaa 18140
Query: 451 tcctttctaccgtagttttcgtccaagatatctctttgttcttttgaagcattcttcaat 510
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18139 tcctttctaccgtagttttcgtccaagatatctctttgttcttttgtagcattcttcaat 18080
Query: 511 gcaacgttgatgacccaagaacatttgttgtcttggatattcgtaccaatcttaccgata 570
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18079 gcaacgttgatgacccaagaacatttgttgtcttggatatcggtaccaatcttaccgata 18020
Query: 571 tcttttggtttaccgaaac-attcaggaaaatctcttggattt-gaaatatcct-ccaat 627
|||| |||||||||||||| || || |||| |||||||||| ||||||| || |||||
Sbjct: 18019 tcttctggtttaccgaaacaatccaagaaatcgtcttggatttggaaatattctcccaat 17960
Query: 628 gggatcattacgtcgctggcctgttttcagttcttttgaatcggtaataccggcagcaaa 687
||||||| ||||||||||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct: 17959 gggatcaatacgtcgctggcctg-tttcaagtcctttgagtcggtaataccggcagcaaa 17901
Query: 688 cttggccagtggcactgctaa 708
| ||||||||| |||||||||
Sbjct: 17900 catggccagtgccactgctaa 17880
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9468
Number of Sequences: 1807
Number of extensions: 9468
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)