BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC07RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1390 900 0.0
3x_Contig1623 123 7e-28
3x_Contig1718 117 4e-26
3x_Contig1762 115 2e-25
3x_Contig1487 115 2e-25
3x_Contig17 111 3e-24
>3x_Contig1390
Length = 7609
Score = 900 bits (454), Expect = 0.0
Identities = 525/542 (96%), Gaps = 5/542 (0%)
Strand = Plus / Plus
Query: 49 cgataaacgaagtttaactactgcaagcatgcgagaggccctgggttcaattcccagctc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 cgataaacgaagtttaactactgcaagcatgcgagaggccctgggttcaattcccagctc 5558
Query: 109 gccccaattaatttttcccaatttatttcccggtatatccgggtaatcgtactacattca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 gccccaattaatttttcccaatttatttcccggtatatccgggtaatcgtactacattca 5618
Query: 169 taattcaaccttctttttccactttaattcatatttacgatgaataagaagaagaattga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619 taattcaaccttctttttccactttaattcatatttacgatgaataagaagaagaattga 5678
Query: 229 gcctgaacatcaatatcaaacccaaatgcgcagaccgatcagatctgaagcccaagctca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 gcctgaacatcaatatcaaacccaaatgcgcagaccgatcagatctgaagcccaagctca 5738
Query: 289 tcgcgagtgccataaacaacagaaaataccaattctcaaaatttatcacactatatgtca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5739 tcgcgagtgccataaacaacagaaaataccaattctcaaaatttatcacacta-atgtca 5797
Query: 349 caacaagcgagtaccgaactcacgatcgaagagggagagctaccgacaaggtttgagatt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5798 caacaagcgagtaccgaactcacgatcgaagagggagagctaccgacaaggtttgagatt 5857
Query: 409 gaattagaattttgtcaatctttggcaaacataccatacgttacatatctactgacacaa 468
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5858 gaattagaatttgttcaatctttggcaaacataccatacgtcacatatctactgacacaa 5917
Query: 469 ttggatctttggcaagacccaaagtttataaagatacttgaaattcccttgaatactggc 528
||| | |||||||||||||||||||||| |||||||||||||| | |||||| |||||||
Sbjct: 5918 ttgcagctttggcaagacccaaagttta-aaagatacttgaaa-taccttgagtactggc 5975
Query: 529 atgagccggaatatgcccaatgccattgtggctcccaattctcttattcgtttgaaaact 588
|||||||||||||||||||||| ||||||| ||| ||||||| ||||||||| |||||
Sbjct: 5976 atgagccggaatatgcccaatg-cattgtgtatccaaattctc-tattcgttttgaaact 6033
Query: 589 tt 590
||
Sbjct: 6034 tt 6035
>3x_Contig1623
Length = 14379
Score = 123 bits (62), Expect = 7e-28
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7072 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 7013
Query: 108 cgccccaatt 117
||||||||||
Sbjct: 7012 cgccccaatt 7003
>3x_Contig1718
Length = 19496
Score = 117 bits (59), Expect = 4e-26
Identities = 66/67 (98%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4962 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5021
Query: 108 cgcccca 114
|||||||
Sbjct: 5022 cgcccca 5028
>3x_Contig1762
Length = 22098
Score = 115 bits (58), Expect = 2e-25
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6166 cgataaacggagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 6225
Query: 108 cgccccaatt 117
||||||||||
Sbjct: 6226 cgccccaatt 6235
>3x_Contig1487
Length = 9002
Score = 115 bits (58), Expect = 2e-25
Identities = 65/66 (98%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5396 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5337
Query: 108 cgcccc 113
||||||
Sbjct: 5336 cgcccc 5331
>3x_Contig17
Length = 819
Score = 111 bits (56), Expect = 3e-24
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 202 cgataaacgaggtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 143
Query: 108 cgccccaa 115
||||||||
Sbjct: 142 cgccccaa 135
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,142
Number of Sequences: 1807
Number of extensions: 15142
Number of successful extensions: 191
Number of sequences better than 1.0e-20: 6
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)