BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig966 539 e-153
3x_Contig672 319 6e-87
>3x_Contig966
Length = 4228
Score = 539 bits (272), Expect = e-153
Identities = 375/395 (94%), Gaps = 11/395 (2%)
Strand = Plus / Minus
Query: 364 ctttgtgctgtaaacattcaatagttcacttgtttcgatataaccttcttcgtggtttat 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 ctttgtgctgtaa-cattcaatagttcacttgtttcgatataaccttcttcgtggtttat 4164
Query: 424 cttagcttcaatgacaccatctctaatggcacgagaaatcatgtattccacagtctgttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4163 cttagcttcaatgacaccatctctaatggcacgagaaatcatgtattccacagtctgttc 4104
Query: 484 agaatctagatgtaattttaggcatatgtccttcaaagaaattttcttatacgttaatga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4103 agaatctagatgtaattttaggcatatgtccttcaaagaaattttcttatacgttaatga 4044
Query: 544 aatcattctaataccgggtcttaatgacatttagatctcaatctgacacatagttgatan 603
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4043 aatcattctaatacc-ggtcttaatgaca-ttagatctcaatctgacacatagttgatag 3986
Query: 604 gtagaatcttg-accaactcttttttatatttggataaaga-tgtgtgaaaaagtttaaa 661
|||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct: 3985 ttagaatcttgaaccaactcttttttatatttggataaagattgtgtgaaaaggttcaaa 3926
Query: 662 tcccctaa-ttgacagcctttgt-atttgataataa-gtagaagtga-ttttcaagaacc 717
|||||||| |||||||||||||| || ||||||||| |||||||||| ||||||||| ||
Sbjct: 3925 tcccctaatttgacagcctttgtaatatgataataaggtagaagtgatttttcaagaccc 3866
Query: 718 -tttggtgggaaaatgt-agttttgggatgtcacc 750
|||||||| ||||||| |||| ||| ||||||||
Sbjct: 3865 ttttggtggaaaaatgtaagttctggaatgtcacc 3831
>3x_Contig672
Length = 2319
Score = 319 bits (161), Expect = 6e-87
Identities = 172/176 (97%)
Strand = Plus / Plus
Query: 87 gcgtttttgaagtacgaatgattaattaactatacaatttatttagtagttcaccacact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2144 gcgtttttgaagtacgaatgattaattaactatacaatttatttagtagttcaccacact 2203
Query: 147 tttcacgaaccctaactgactagattacatcatcaagatctgaatcgaagtccgatagat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2204 tttcacgaaccctaactgactagattacatcatcaagatctgaatcgaagtccgatagat 2263
Query: 207 tcatagagttcttgtccatagttgtttccaaggactcatcagacaatttctttgaa 262
||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 2264 tcatagagttcaggtccatagttgnttccagggactcatcagacaatttctttgaa 2319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8217
Number of Sequences: 1807
Number of extensions: 8217
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)