BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC08RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig969 396 e-110
3x_Contig928 172 8e-43
>3x_Contig969
Length = 3546
Score = 396 bits (200), Expect = e-110
Identities = 277/295 (93%), Gaps = 6/295 (2%)
Strand = Plus / Minus
Query: 633 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgtttcgac 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3510 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 3451
Query: 693 caattcggctaattttctaatcaactttctctcancaacgggtagtttcgatgtttcaag 752
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 3450 caattcggctaattttctaatcaactttctctcaacaac-ggtagtttcgatg-ttcaag 3393
Query: 753 ttagtcttgaacagatcgtcagtgtcttccaagttttcgaatggatcattttcgatctta 812
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3392 ttagtcttgaacagatcgtcagtgtcttccaagttttcgaatggatcatcttcgatctta 3333
Query: 813 gatggataactggtgtccatgacgtaaagctctttc-actgggagatattttggtcctt- 870
||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||
Sbjct: 3332 gatggataactggtgtccatgacgtaagcctctttcaacttggagatatcttggtcctta 3273
Query: 871 aagatgaaa-cactgtcgtacaggtcc-attgtactagacccttgaattcaccta 923
||||||||| |||||||||||| |||| || ||||||||| | ||| ||||||||
Sbjct: 3272 aagatgaaaccactgtcgtacaagtccaatagtactagacgcatgatttcaccta 3218
>3x_Contig928
Length = 1948
Score = 172 bits (87), Expect = 8e-43
Identities = 145/155 (93%), Gaps = 7/155 (4%)
Strand = Plus / Minus
Query: 48 aatagttttaaaataactagtgccatattatccaaactggacataagcataactaatatt 107
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 148 aatagttttaaaataactagtgccatattatcc-aactggacataagcataactaatatt 90
Query: 108 attaagatttaaatttgaaatatattcatatttgtacattaacacataagttagtttaca 167
||| |||||| | ||||||||||| || |||||||||| ||||||||||||||| |||||
Sbjct: 89 attcagattt-actttgaaatata-tcctatttgtaca-taacacataagttag-ttaca 34
Query: 168 tttgcgaagaacaatctgttccggcctacatatat 202
|||||| ||||||||||||||||||| ||||||||
Sbjct: 33 tttgcg-agaacaatctgttccggcc-acatatat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7347
Number of Sequences: 1807
Number of extensions: 7347
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)