BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC09FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig834 664 0.0
3x_Contig1477 505 e-143
>3x_Contig834
Length = 2891
Score = 664 bits (335), Expect = 0.0
Identities = 410/426 (96%), Gaps = 7/426 (1%)
Strand = Plus / Minus
Query: 374 gttctgagttttttcaactttacagccactagttggttttctattcgatcttttatcgat 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2885 gttctgagttttttcaactttacagccactagttggttttctattcgatcttttatcgat 2826
Query: 434 ttgtagtgttgtcgtatgtttgtcacttgttgttttataataggaatctcatcgattttt 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2825 ttgtagtgttgtcgtatgtttgtcacttgttgttttataataggaatctcatcgattttt 2766
Query: 494 tgttgtagtatgtctacgtgatccatgcatatgaaatctgaaaggctactgtgatcgtca 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2765 tgttgtagtatgtctacgtgatccatgcatatgaaatctgaaaggctactgtgatcgtca 2706
Query: 554 gtcaagtcgtattttgtaccctgcaagatcttcatctttgttgntatctcgttttgccaa 613
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2705 gtcaagtcgtattttgtaccctgcaagatcttcatctttgttgttatctcgttttgccaa 2646
Query: 614 taactcacgtcattgactatcttgact-aaaccagctttgaccattcattgtc-atcaac 671
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 2645 taactcacgtcattgactatctcgactaaaaccagctttgaccattcattgtcaatcaac 2586
Query: 672 tctgtagaaat-catttctcgagcatgatattcttgaag-actcaaccctgttcaccaaa 729
||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 2585 tctgtagaaatacatttctcgagcatgatattcttgaagaactcaacctggttcaccaaa 2526
Query: 730 caattaa-tttaaatttaa-ttttaatctggacttttgaaagct-tccattttagttccc 786
||||||| | ||||||||| ||| ||||||||||||||| |||| ||||||| ||||| |
Sbjct: 2525 caattaagtataaatttaagtttaaatctggacttttgagagctgtccatttcagttcgc 2466
Query: 787 acttta 792
||||||
Sbjct: 2465 acttta 2460
>3x_Contig1477
Length = 9322
Score = 505 bits (255), Expect = e-143
Identities = 294/307 (95%)
Strand = Plus / Minus
Query: 124 ttcgaatactaattcccttatattttctaactgtgtatcgtctttctttacaatctggaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgaatactaattcccttatattttctaactgtgtatcgtctttctttacaatctggaa 262
Query: 184 aagttccttcaaatctggtagtggaatctgctgttccttcaatatcgtgcatttgtcttt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttccttcaaatctggtagtggaatctgctgttccttcaatatcgtgcatttgtcgaa 202
Query: 244 ttgatcagtgattgatctcaagaaatcggcaagttcattctcaaattcgttcaattcagt 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatcagtgattgatctcaagaaatcggcaagttcattctcaaattcgttcaattcagt 142
Query: 304 gacataatcactttccaacaatttgaatagattatttttgctatccctgctgaaatgtga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gacataatcactttccaacaatttgaatagattatttttgctatccctgctgaaatgtga 82
Query: 364 atcaaagtaagttctgagttttttcaactttacagccactagttggttttctattcgatc 423
|||||| ||| |||| | |||||||||||||||| |||||| || |||||||||| |||
Sbjct: 81 atcaaattaatttcttatttttttcaactttacatccactatttttttttctattctatc 22
Query: 424 ttttatc 430
|||||||
Sbjct: 21 ttttatc 15
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,969
Number of Sequences: 1807
Number of extensions: 10969
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 2
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)