BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC09RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1655 1362 0.0
>3x_Contig1655
Length = 16228
Score = 1362 bits (687), Expect = 0.0
Identities = 868/904 (96%), Gaps = 21/904 (2%)
Strand = Plus / Plus
Query: 57 gccatggtacccttc-tgtattataaaccttccacacaaatgataatttttttcca-gga 114
||||||||||||| | || | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 4018 gccatggtaccctccatggagtataaaccttccacacaaatgataatttttttccaagga 4077
Query: 115 cgatgagtcttcgattgaccttgaacaatttgttcacggatcaacttctctaatgcgcgc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 cgatgagtcttcgattgaccttgaacaatttgttcacggatcaacttctctaatgcgcgc 4137
Query: 175 atatcattatgcttgaatgtcttaacagctgctcctgataaacggacaccagttctaata 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 atatcattatgcttgaatgtcttaacagctgctcctgataaacggacaccagttctaata 4197
Query: 235 gaggtatgatttaaagaatcagagataaccaaacatttgctatctaagaacgaattgaag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 gaggtatgatttaaagaatcagagataaccaaacatttgctatctaagaacgaattgaag 4257
Query: 295 aaattagcattggtaccgtaccccatagagaacaaaattgcatcttctttacctacgaat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4258 aaattagcattggtaccgtaccccatagagaacaaaattgcatcttctttacctacgaat 4317
Query: 355 tgtgcgacgtatttttcggtcatgacgtgcaaatcagtagtaccaattctggtccttgga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4318 tgtgcgacgtatttttcggtcatgacgtgcaaatcagtagtaccaattctggtccttgga 4377
Query: 415 ccaccagaataaacaccgtatttatcggtggcttctagcgctgcagtggtacattgaccc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4378 ccaccagaataaacaccgtatttatcggtggcttctagcgctgcagtggtacattgaccc 4437
Query: 475 tctgattgtgcaaaacctaagtagttgtacgaggaaagatttagacacattgatgtagta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4438 tctgattgtgcaaaacctaagtagttgtacgaggaaagatttagacacattgatgtagta 4497
Query: 535 ccaggatacgtgaagtagtcgttcaagttgtgagagacacggtctaagcagcggatgaat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4498 ccaggatacgtgaagtagtcgttcaagttgtgagagacacggtctaagcagcggatgaat 4557
Query: 595 cttccaggtacgccagtagtaggtctagagaagcaatcgtcaattctttgctt-aacctt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4558 cttccaggtacgccagtagtaggtctagagaagcaatcgtcaattctttgcttcaacctt 4617
Query: 654 ctgacgtaaaaactctcaaatgtggagaaaccagggtgctaacccatcttgttccataat 713
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4618 ctgacgtaaaaactctcaaatgtggagaa-ccagggtgctaacccatcttgttccataat 4676
Query: 714 atccttatgcttttccttctggaaaangta-gaccta-gaaatcatggatatggcctagt 771
|||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 4677 atccttatgcttttccttctggaa--ggtaagacctaagaaatcatggatatggcctagt 4734
Query: 772 attatc-aaataagatagttcaaat-agtaatc-atgaaacatgattagc-ggagcatct 827
|| ||| |||||||||||||||||| ||||||| |||||||||||| ||| |||||||||
Sbjct: 4735 ataatcaaaataagatagttcaaataagtaatcaatgaaacatgataagcgggagcatct 4794
Query: 828 -atatcgggtcctgtaatgcctta-catccttgaactaactttgat--caatacttttc- 882
||||||||||||||||||||||| ||||| || ||| |||||||| |||||| |||
Sbjct: 4795 aatatcgggtcctgtaatgccttaccatccctggacttactttgatacaaatactcttct 4854
Query: 883 gatgtc-actgaccaaattcg-tctcctcctt-ttctctaacggaatttcct-aggagga 938
|||||| |||||||||||||| |||||| ||| | ||||| |||||| |||| |||||||
Sbjct: 4855 gatgtcaactgaccaaattcgttctccttcttatcctctagcggaatatcctcaggagga 4914
Query: 939 atta 942
||||
Sbjct: 4915 atta 4918
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6149
Number of Sequences: 1807
Number of extensions: 6149
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)