BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC10FM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1525 601 e-171
>3x_Contig1525
Length = 8924
Score = 601 bits (303), Expect = e-171
Identities = 397/415 (95%), Gaps = 10/415 (2%)
Strand = Plus / Plus
Query: 151 cgaagaaccatactcaaagcagaatgaagccaagtaaggttatcaatgaagggcctttga 210
||||||||||| ||||||| |||| ||||||||| ||||||||||| ||||| |||||||
Sbjct: 43 cgaagaaccat-ctcaaag-agaa-gaagccaag-aaggttatcaa-gaagg-cctttga 96
Query: 211 agaaagactatcaagctggtaagaaccaatggttcttcactaagttgaacttttattcta 270
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 97 agaaagac-atcaagctggtaagaaccaatggttcttcactaagttgaacttctaagcta 155
Query: 271 aatagctgcatgtaaacctaattagtcaattttcaaccatatatttcatttgtactctgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aatagctgcatgtaaacctaattagtcaattttcaaccatatatttcatttgtactctgc 215
Query: 331 aagttttccagtctgtttatgcagtccgatcgattttgaaatccatcaacaaacactacc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aagttttccagtctgtttatgcagtccgatcgattttgaaatccatcaacaaacactacc 275
Query: 391 tttgttcgagacacttttaaaggaaatctaaaagttatgtggcccattaagcgttaaagt 450
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 276 tttgttcgagacacttttaaaggaaatctaaaagttatgtggccca-taagcgttaaagt 334
Query: 451 ccaataaaaatgaaagaatccagacagtaatcttaagtttcagcttatatctactagaca 510
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 335 ccaataaaaatgaaagaatccagacagtaatctcaagttacagcttatatctactagaca 394
Query: 511 gtatttacctacattcattacaaccccaaacgttttacattaagggtcacaaaga 565
||| |||||||||||||| |||| ||||||||||||||| ||| |||||||||||
Sbjct: 395 gtagttacctacattcataacaa-cccaaacgttttaca-taatggtcacaaaga 447
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,890
Number of Sequences: 1807
Number of extensions: 17890
Number of successful extensions: 223
Number of sequences better than 1.0e-20: 1
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)